Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15360

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15355 and A4249_RS15360 are separated by 144 nucleotidesA4249_RS15360 and A4249_RS15365 are separated by 29 nucleotides A4249_RS15355: A4249_RS15355 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,109,946 to 3,112,372 _RS15355 A4249_RS15360: A4249_RS15360 - DNA replication/repair protein RecF, at 3,112,517 to 3,113,638 _RS15360 A4249_RS15365: A4249_RS15365 - DNA polymerase III subunit beta, at 3,113,668 to 3,114,786 _RS15365 Position (kb) 3112 3113 3114Strain fitness (log2 ratio) -2 -1 0 1 2at 3112.472 kb on + strandat 3112.472 kb on + strandat 3112.472 kb on + strandat 3112.473 kb on - strandat 3112.473 kb on - strandat 3112.473 kb on - strandat 3112.473 kb on - strandat 3112.474 kb on + strandat 3112.474 kb on + strandat 3112.474 kb on + strandat 3112.474 kb on + strandat 3112.475 kb on - strandat 3112.518 kb on + strandat 3112.519 kb on - strandat 3112.519 kb on - strandat 3112.550 kb on + strandat 3112.550 kb on + strandat 3112.551 kb on - strandat 3113.301 kb on + strand, within A4249_RS15360at 3113.301 kb on + strand, within A4249_RS15360at 3113.302 kb on - strand, within A4249_RS15360at 3113.601 kb on + strandat 3113.601 kb on + strandat 3113.601 kb on + strandat 3113.601 kb on + strandat 3113.601 kb on + strandat 3113.601 kb on + strandat 3113.601 kb on + strandat 3113.602 kb on - strandat 3113.602 kb on - strandat 3113.602 kb on - strandat 3113.602 kb on - strandat 3113.650 kb on - strandat 3113.669 kb on + strandat 3113.669 kb on + strandat 3113.669 kb on + strandat 3113.669 kb on + strandat 3113.669 kb on + strandat 3113.670 kb on - strandat 3113.670 kb on - strandat 3113.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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3,112,472 + +0.4
3,112,472 + -0.8
3,112,472 + -0.7
3,112,473 - +0.6
3,112,473 - +2.7
3,112,473 - +0.3
3,112,473 - -0.5
3,112,474 + -1.0
3,112,474 + +0.0
3,112,474 + +0.1
3,112,474 + +0.1
3,112,475 - +0.5
3,112,518 + +0.7
3,112,519 - -1.5
3,112,519 - -0.4
3,112,550 + +0.0
3,112,550 + +0.5
3,112,551 - -0.8
3,113,301 + A4249_RS15360 0.70 +0.5
3,113,301 + A4249_RS15360 0.70 -0.7
3,113,302 - A4249_RS15360 0.70 -0.1
3,113,601 + -2.1
3,113,601 + -2.0
3,113,601 + -1.0
3,113,601 + +0.5
3,113,601 + -1.0
3,113,601 + -0.5
3,113,601 + -1.5
3,113,602 - +0.5
3,113,602 - -0.7
3,113,602 - -1.0
3,113,602 - -0.5
3,113,650 - +0.3
3,113,669 + +1.4
3,113,669 + -0.9
3,113,669 + -0.4
3,113,669 + -0.8
3,113,669 + -0.2
3,113,670 - -0.1
3,113,670 - +0.4
3,113,670 - -0.5

Or see this region's nucleotide sequence