Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15235

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15225 and A4249_RS15230 overlap by 1 nucleotidesA4249_RS15230 and A4249_RS15235 overlap by 8 nucleotidesA4249_RS15235 and A4249_RS15240 are separated by 51 nucleotides A4249_RS15225: A4249_RS15225 - flagellar biosynthesis protein FliQ, at 3,081,745 to 3,082,008 _RS15225 A4249_RS15230: A4249_RS15230 - flagellar biosynthetic protein FliR, at 3,082,008 to 3,082,781 _RS15230 A4249_RS15235: A4249_RS15235 - flagellar biosynthesis protein FlhB, at 3,082,774 to 3,083,850 _RS15235 A4249_RS15240: A4249_RS15240 - response regulator, at 3,083,902 to 3,085,953 _RS15240 Position (kb) 3082 3083 3084Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3081.895 kb on + strand, within A4249_RS15225at 3081.895 kb on + strand, within A4249_RS15225at 3081.895 kb on + strand, within A4249_RS15225at 3081.896 kb on - strand, within A4249_RS15225at 3081.896 kb on - strand, within A4249_RS15225at 3081.896 kb on - strand, within A4249_RS15225at 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.006 kb on + strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.007 kb on - strandat 3082.017 kb on + strandat 3082.018 kb on - strandat 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.107 kb on + strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.108 kb on - strand, within A4249_RS15230at 3082.544 kb on + strand, within A4249_RS15230at 3082.544 kb on + strand, within A4249_RS15230at 3082.544 kb on + strand, within A4249_RS15230at 3082.544 kb on + strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.545 kb on - strand, within A4249_RS15230at 3082.645 kb on - strand, within A4249_RS15230at 3082.752 kb on + strandat 3082.752 kb on + strandat 3083.600 kb on - strand, within A4249_RS15235at 3083.600 kb on - strand, within A4249_RS15235at 3083.617 kb on + strand, within A4249_RS15235at 3083.618 kb on - strand, within A4249_RS15235at 3083.752 kb on + strandat 3083.778 kb on + strandat 3083.872 kb on + strandat 3083.872 kb on + strandat 3083.872 kb on + strandat 3083.872 kb on + strandat 3083.872 kb on + strandat 3083.873 kb on - strandat 3083.901 kb on + strandat 3083.901 kb on + strandat 3083.901 kb on + strandat 3083.901 kb on + strandat 3083.901 kb on + strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strandat 3083.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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3,081,895 + A4249_RS15225 0.57 -0.4
3,081,895 + A4249_RS15225 0.57 +0.0
3,081,895 + A4249_RS15225 0.57 -1.6
3,081,896 - A4249_RS15225 0.57 +1.0
3,081,896 - A4249_RS15225 0.57 -1.3
3,081,896 - A4249_RS15225 0.57 +0.0
3,082,006 + +1.3
3,082,006 + -1.6
3,082,006 + -0.4
3,082,006 + -2.6
3,082,006 + -0.2
3,082,006 + +1.2
3,082,006 + -2.6
3,082,006 + +1.8
3,082,006 + -0.1
3,082,006 + -0.6
3,082,006 + +0.0
3,082,007 - -0.7
3,082,007 - +0.0
3,082,007 - +1.0
3,082,007 - -0.6
3,082,007 - -0.2
3,082,007 - +0.6
3,082,007 - +0.3
3,082,007 - -0.1
3,082,007 - +1.3
3,082,007 - -0.8
3,082,007 - -1.6
3,082,017 + +0.4
3,082,018 - -3.1
3,082,107 + A4249_RS15230 0.13 -2.3
3,082,107 + A4249_RS15230 0.13 -2.0
3,082,107 + A4249_RS15230 0.13 -1.6
3,082,107 + A4249_RS15230 0.13 -1.3
3,082,107 + A4249_RS15230 0.13 +0.0
3,082,107 + A4249_RS15230 0.13 -1.0
3,082,107 + A4249_RS15230 0.13 -1.2
3,082,107 + A4249_RS15230 0.13 -1.2
3,082,107 + A4249_RS15230 0.13 +1.0
3,082,107 + A4249_RS15230 0.13 -0.1
3,082,107 + A4249_RS15230 0.13 +2.0
3,082,108 - A4249_RS15230 0.13 -1.2
3,082,108 - A4249_RS15230 0.13 -0.3
3,082,108 - A4249_RS15230 0.13 -1.0
3,082,108 - A4249_RS15230 0.13 -1.0
3,082,108 - A4249_RS15230 0.13 +0.0
3,082,108 - A4249_RS15230 0.13 -0.1
3,082,108 - A4249_RS15230 0.13 +2.0
3,082,108 - A4249_RS15230 0.13 -1.8
3,082,544 + A4249_RS15230 0.69 -0.1
3,082,544 + A4249_RS15230 0.69 -0.8
3,082,544 + A4249_RS15230 0.69 -1.2
3,082,544 + A4249_RS15230 0.69 +0.0
3,082,545 - A4249_RS15230 0.69 -1.0
3,082,545 - A4249_RS15230 0.69 -1.6
3,082,545 - A4249_RS15230 0.69 -1.0
3,082,545 - A4249_RS15230 0.69 -0.2
3,082,545 - A4249_RS15230 0.69 -1.6
3,082,545 - A4249_RS15230 0.69 -1.4
3,082,545 - A4249_RS15230 0.69 -1.0
3,082,545 - A4249_RS15230 0.69 -2.3
3,082,545 - A4249_RS15230 0.69 -1.0
3,082,645 - A4249_RS15230 0.82 +1.2
3,082,752 + -0.3
3,082,752 + +0.9
3,083,600 - A4249_RS15235 0.77 -1.8
3,083,600 - A4249_RS15235 0.77 +0.5
3,083,617 + A4249_RS15235 0.78 -0.5
3,083,618 - A4249_RS15235 0.78 -2.0
3,083,752 + -0.9
3,083,778 + -1.0
3,083,872 + -2.0
3,083,872 + -1.0
3,083,872 + +0.0
3,083,872 + +0.8
3,083,872 + -1.5
3,083,873 - +0.7
3,083,901 + -0.5
3,083,901 + +2.0
3,083,901 + -0.2
3,083,901 + +0.0
3,083,901 + +0.6
3,083,902 - +1.5
3,083,902 - +0.2
3,083,902 - +0.0
3,083,902 - +2.0
3,083,902 - +0.3
3,083,902 - -1.5
3,083,902 - -0.4
3,083,902 - +0.8
3,083,902 - +1.0
3,083,902 - -0.1

Or see this region's nucleotide sequence