Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15190 and A4249_RS15195 are separated by 4 nucleotides A4249_RS15195 and A4249_RS15200 are separated by 161 nucleotides A4249_RS15200 and A4249_RS15205 overlap by 4 nucleotides
A4249_RS15190: A4249_RS15190 - acetate--CoA ligase, at 3,070,239 to 3,072,194
_RS15190
A4249_RS15195: A4249_RS15195 - DcaP family trimeric outer membrane transporter, at 3,072,199 to 3,073,551
_RS15195
A4249_RS15200: A4249_RS15200 - response regulator transcription factor, at 3,073,713 to 3,074,321
_RS15200
A4249_RS15205: A4249_RS15205 - PAS-domain containing protein, at 3,074,318 to 3,077,704
_RS15205
Position (kb)
3072
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1 at 3071.233 kb on + strand, within A4249_RS15190 at 3071.234 kb on - strand, within A4249_RS15190 at 3071.234 kb on - strand, within A4249_RS15190 at 3071.240 kb on + strand, within A4249_RS15190 at 3071.240 kb on + strand, within A4249_RS15190 at 3071.240 kb on + strand, within A4249_RS15190 at 3071.240 kb on + strand, within A4249_RS15190 at 3071.240 kb on + strand, within A4249_RS15190 at 3071.240 kb on + strand, within A4249_RS15190 at 3071.241 kb on - strand, within A4249_RS15190 at 3071.241 kb on - strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.242 kb on + strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.243 kb on - strand, within A4249_RS15190 at 3071.344 kb on + strand, within A4249_RS15190 at 3071.344 kb on + strand, within A4249_RS15190 at 3071.345 kb on - strand, within A4249_RS15190 at 3071.398 kb on + strand, within A4249_RS15190 at 3071.398 kb on + strand, within A4249_RS15190 at 3071.398 kb on + strand, within A4249_RS15190 at 3071.399 kb on - strand, within A4249_RS15190 at 3071.399 kb on - strand, within A4249_RS15190 at 3071.399 kb on - strand, within A4249_RS15190 at 3071.405 kb on + strand, within A4249_RS15190 at 3071.405 kb on + strand, within A4249_RS15190 at 3071.406 kb on - strand, within A4249_RS15190 at 3071.406 kb on - strand, within A4249_RS15190 at 3071.406 kb on - strand, within A4249_RS15190 at 3071.406 kb on - strand, within A4249_RS15190 at 3071.477 kb on - strand, within A4249_RS15190 at 3071.584 kb on - strand, within A4249_RS15190 at 3071.625 kb on + strand, within A4249_RS15190 at 3071.625 kb on + strand, within A4249_RS15190 at 3071.626 kb on - strand, within A4249_RS15190 at 3071.737 kb on + strand, within A4249_RS15190 at 3071.764 kb on + strand, within A4249_RS15190 at 3071.764 kb on + strand, within A4249_RS15190 at 3071.764 kb on + strand, within A4249_RS15190 at 3071.764 kb on + strand, within A4249_RS15190 at 3071.765 kb on - strand, within A4249_RS15190 at 3071.765 kb on - strand, within A4249_RS15190 at 3071.765 kb on - strand, within A4249_RS15190 at 3071.765 kb on - strand, within A4249_RS15190 at 3072.106 kb on + strand at 3072.106 kb on + strand at 3072.106 kb on + strand at 3072.107 kb on - strand at 3072.107 kb on - strand at 3072.158 kb on - strand at 3072.663 kb on - strand, within A4249_RS15195 at 3072.663 kb on - strand, within A4249_RS15195 at 3073.138 kb on - strand, within A4249_RS15195 at 3073.223 kb on + strand, within A4249_RS15195 at 3073.224 kb on - strand, within A4249_RS15195 at 3073.235 kb on + strand, within A4249_RS15195 at 3073.236 kb on - strand, within A4249_RS15195 at 3074.015 kb on + strand, within A4249_RS15200 at 3074.016 kb on - strand, within A4249_RS15200 at 3074.319 kb on + strand at 3074.319 kb on + strand at 3074.320 kb on - strand at 3074.320 kb on - strand at 3074.320 kb on - strand at 3074.320 kb on - strand at 3074.320 kb on - strand at 3074.320 kb on - strand at 3074.323 kb on + strand at 3074.323 kb on + strand at 3074.323 kb on + strand at 3074.323 kb on + strand at 3074.323 kb on + strand at 3074.324 kb on - strand at 3074.324 kb on - strand at 3074.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 3,071,233 + A4249_RS15190 0.51 +0.5 3,071,234 - A4249_RS15190 0.51 +1.0 3,071,234 - A4249_RS15190 0.51 -1.4 3,071,240 + A4249_RS15190 0.51 +0.7 3,071,240 + A4249_RS15190 0.51 -1.1 3,071,240 + A4249_RS15190 0.51 +0.1 3,071,240 + A4249_RS15190 0.51 -0.2 3,071,240 + A4249_RS15190 0.51 +0.0 3,071,240 + A4249_RS15190 0.51 +0.0 3,071,241 - A4249_RS15190 0.51 +0.0 3,071,241 - A4249_RS15190 0.51 -1.0 3,071,242 + A4249_RS15190 0.51 -1.0 3,071,242 + A4249_RS15190 0.51 +0.2 3,071,242 + A4249_RS15190 0.51 +0.6 3,071,242 + A4249_RS15190 0.51 +1.5 3,071,242 + A4249_RS15190 0.51 +0.3 3,071,242 + A4249_RS15190 0.51 +0.1 3,071,242 + A4249_RS15190 0.51 +0.2 3,071,242 + A4249_RS15190 0.51 -0.8 3,071,243 - A4249_RS15190 0.51 -0.3 3,071,243 - A4249_RS15190 0.51 +0.9 3,071,243 - A4249_RS15190 0.51 +0.3 3,071,243 - A4249_RS15190 0.51 -0.4 3,071,243 - A4249_RS15190 0.51 +0.1 3,071,243 - A4249_RS15190 0.51 +0.9 3,071,243 - A4249_RS15190 0.51 -0.5 3,071,243 - A4249_RS15190 0.51 +0.2 3,071,344 + A4249_RS15190 0.56 -2.3 3,071,344 + A4249_RS15190 0.56 -0.0 3,071,345 - A4249_RS15190 0.57 +0.5 3,071,398 + A4249_RS15190 0.59 -0.2 3,071,398 + A4249_RS15190 0.59 +0.0 3,071,398 + A4249_RS15190 0.59 +0.5 3,071,399 - A4249_RS15190 0.59 +1.0 3,071,399 - A4249_RS15190 0.59 +1.5 3,071,399 - A4249_RS15190 0.59 -0.6 3,071,405 + A4249_RS15190 0.60 +1.0 3,071,405 + A4249_RS15190 0.60 +1.1 3,071,406 - A4249_RS15190 0.60 -0.4 3,071,406 - A4249_RS15190 0.60 +0.1 3,071,406 - A4249_RS15190 0.60 +0.1 3,071,406 - A4249_RS15190 0.60 +0.2 3,071,477 - A4249_RS15190 0.63 -0.3 3,071,584 - A4249_RS15190 0.69 +0.8 3,071,625 + A4249_RS15190 0.71 -0.3 3,071,625 + A4249_RS15190 0.71 -0.3 3,071,626 - A4249_RS15190 0.71 +1.1 3,071,737 + A4249_RS15190 0.77 -0.6 3,071,764 + A4249_RS15190 0.78 +0.1 3,071,764 + A4249_RS15190 0.78 -0.1 3,071,764 + A4249_RS15190 0.78 +0.2 3,071,764 + A4249_RS15190 0.78 -0.2 3,071,765 - A4249_RS15190 0.78 -1.2 3,071,765 - A4249_RS15190 0.78 -0.3 3,071,765 - A4249_RS15190 0.78 +0.2 3,071,765 - A4249_RS15190 0.78 -1.0 3,072,106 + +0.8 3,072,106 + +0.2 3,072,106 + -0.3 3,072,107 - +0.2 3,072,107 - +0.5 3,072,158 - -1.4 3,072,663 - A4249_RS15195 0.34 -0.2 3,072,663 - A4249_RS15195 0.34 -1.1 3,073,138 - A4249_RS15195 0.69 +0.0 3,073,223 + A4249_RS15195 0.76 -0.3 3,073,224 - A4249_RS15195 0.76 +0.0 3,073,235 + A4249_RS15195 0.77 -0.0 3,073,236 - A4249_RS15195 0.77 +1.6 3,074,015 + A4249_RS15200 0.50 +0.0 3,074,016 - A4249_RS15200 0.50 +0.0 3,074,319 + -0.6 3,074,319 + +0.7 3,074,320 - +0.2 3,074,320 - +1.6 3,074,320 - +0.4 3,074,320 - +0.1 3,074,320 - -2.0 3,074,320 - +1.0 3,074,323 + +0.4 3,074,323 + +0.1 3,074,323 + +1.3 3,074,323 + -0.1 3,074,323 + -1.7 3,074,324 - -1.8 3,074,324 - -1.4 3,074,324 - -0.6
Or see this region's nucleotide sequence