Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14260

Experiment: Tween 20 (C), 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS14245 and A4249_RS14250 are separated by 126 nucleotidesA4249_RS14250 and A4249_RS14255 are separated by 30 nucleotidesA4249_RS14255 and A4249_RS14260 overlap by 4 nucleotidesA4249_RS14260 and A4249_RS14265 overlap by 4 nucleotidesA4249_RS14265 and A4249_RS14270 are separated by 95 nucleotides A4249_RS14245: A4249_RS14245 - TVP38/TMEM64 family protein, at 2,869,399 to 2,870,148 _RS14245 A4249_RS14250: A4249_RS14250 - 50S ribosomal protein L34, at 2,870,275 to 2,870,409 _RS14250 A4249_RS14255: A4249_RS14255 - ribonuclease P protein component, at 2,870,440 to 2,870,844 _RS14255 A4249_RS14260: A4249_RS14260 - membrane protein insertase YidC, at 2,870,841 to 2,872,637 _RS14260 A4249_RS14265: A4249_RS14265 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 2,872,634 to 2,873,287 _RS14265 A4249_RS14270: A4249_RS14270 - pitrilysin family protein, at 2,873,383 to 2,876,247 _RS14270 Position (kb) 2870 2871 2872 2873Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2869.877 kb on + strand, within A4249_RS14245at 2869.877 kb on + strand, within A4249_RS14245at 2869.877 kb on + strand, within A4249_RS14245at 2869.877 kb on + strand, within A4249_RS14245at 2869.878 kb on - strand, within A4249_RS14245at 2869.878 kb on - strand, within A4249_RS14245at 2869.953 kb on - strand, within A4249_RS14245at 2870.000 kb on + strand, within A4249_RS14245at 2870.000 kb on + strand, within A4249_RS14245at 2870.000 kb on + strand, within A4249_RS14245at 2870.000 kb on + strand, within A4249_RS14245at 2870.000 kb on + strand, within A4249_RS14245at 2870.001 kb on - strand, within A4249_RS14245at 2870.001 kb on - strand, within A4249_RS14245at 2870.001 kb on - strand, within A4249_RS14245at 2870.049 kb on - strand, within A4249_RS14245at 2870.049 kb on - strand, within A4249_RS14245at 2870.049 kb on - strand, within A4249_RS14245at 2870.049 kb on - strand, within A4249_RS14245at 2870.453 kb on + strandat 2870.453 kb on + strandat 2870.453 kb on + strandat 2870.766 kb on + strand, within A4249_RS14255at 2872.579 kb on - strandat 2873.286 kb on - strandat 2873.384 kb on + strandat 2873.384 kb on + strandat 2873.384 kb on + strandat 2873.385 kb on - strandat 2873.385 kb on - strandat 2873.570 kb on + strandat 2873.636 kb on + strandat 2873.637 kb on - strandat 2873.637 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
remove
2,869,877 + A4249_RS14245 0.64 -0.5
2,869,877 + A4249_RS14245 0.64 +0.1
2,869,877 + A4249_RS14245 0.64 +0.5
2,869,877 + A4249_RS14245 0.64 -1.1
2,869,878 - A4249_RS14245 0.64 +0.4
2,869,878 - A4249_RS14245 0.64 +2.2
2,869,953 - A4249_RS14245 0.74 +0.6
2,870,000 + A4249_RS14245 0.80 -0.2
2,870,000 + A4249_RS14245 0.80 -0.3
2,870,000 + A4249_RS14245 0.80 -0.0
2,870,000 + A4249_RS14245 0.80 -0.5
2,870,000 + A4249_RS14245 0.80 -0.2
2,870,001 - A4249_RS14245 0.80 +0.1
2,870,001 - A4249_RS14245 0.80 +0.6
2,870,001 - A4249_RS14245 0.80 +0.5
2,870,049 - A4249_RS14245 0.87 -0.6
2,870,049 - A4249_RS14245 0.87 +0.4
2,870,049 - A4249_RS14245 0.87 +0.9
2,870,049 - A4249_RS14245 0.87 +1.0
2,870,453 + -1.3
2,870,453 + +0.0
2,870,453 + +3.4
2,870,766 + A4249_RS14255 0.80 -4.0
2,872,579 - -2.3
2,873,286 - +0.8
2,873,384 + +0.2
2,873,384 + +1.6
2,873,384 + -0.6
2,873,385 - -0.0
2,873,385 - +1.1
2,873,570 + -0.5
2,873,636 + -1.2
2,873,637 - -1.4
2,873,637 - +0.8

Or see this region's nucleotide sequence