Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13835

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13820 and A4249_RS13825 are separated by 56 nucleotidesA4249_RS13825 and A4249_RS13830 are separated by 81 nucleotidesA4249_RS13830 and A4249_RS13835 overlap by 1 nucleotidesA4249_RS13835 and A4249_RS13840 are separated by 37 nucleotides A4249_RS13820: A4249_RS13820 - hypothetical protein, at 2,790,759 to 2,791,052 _RS13820 A4249_RS13825: A4249_RS13825 - zinc-finger domain-containing protein, at 2,791,109 to 2,791,348 _RS13825 A4249_RS13830: A4249_RS13830 - VOC family protein, at 2,791,430 to 2,791,870 _RS13830 A4249_RS13835: A4249_RS13835 - hypothetical protein, at 2,791,870 to 2,792,487 _RS13835 A4249_RS13840: A4249_RS13840 - DNA polymerase I, at 2,792,525 to 2,795,437 _RS13840 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -2 -1 0 1at 2791.073 kb on - strandat 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.220 kb on + strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.221 kb on - strand, within A4249_RS13825at 2791.222 kb on + strand, within A4249_RS13825at 2791.222 kb on + strand, within A4249_RS13825at 2791.222 kb on + strand, within A4249_RS13825at 2791.222 kb on + strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.223 kb on - strand, within A4249_RS13825at 2791.259 kb on + strand, within A4249_RS13825at 2791.260 kb on - strand, within A4249_RS13825at 2791.310 kb on + strand, within A4249_RS13825at 2791.310 kb on + strand, within A4249_RS13825at 2791.311 kb on - strand, within A4249_RS13825at 2791.311 kb on - strand, within A4249_RS13825at 2791.311 kb on - strand, within A4249_RS13825at 2791.354 kb on + strandat 2791.392 kb on + strandat 2791.392 kb on + strandat 2791.392 kb on + strandat 2791.392 kb on + strandat 2791.393 kb on - strandat 2791.393 kb on - strandat 2791.393 kb on - strandat 2791.393 kb on - strandat 2791.393 kb on - strandat 2791.394 kb on + strandat 2791.394 kb on + strandat 2791.394 kb on + strandat 2791.394 kb on + strandat 2791.394 kb on + strandat 2791.395 kb on - strandat 2791.395 kb on - strandat 2791.395 kb on - strandat 2791.395 kb on - strandat 2791.395 kb on - strandat 2791.395 kb on - strandat 2791.436 kb on + strandat 2791.437 kb on - strandat 2791.487 kb on + strand, within A4249_RS13830at 2791.487 kb on + strand, within A4249_RS13830at 2791.487 kb on + strand, within A4249_RS13830at 2791.487 kb on + strand, within A4249_RS13830at 2791.487 kb on + strand, within A4249_RS13830at 2791.488 kb on - strand, within A4249_RS13830at 2791.488 kb on - strand, within A4249_RS13830at 2791.488 kb on - strand, within A4249_RS13830at 2791.488 kb on - strand, within A4249_RS13830at 2791.488 kb on - strand, within A4249_RS13830at 2791.488 kb on - strand, within A4249_RS13830at 2791.676 kb on + strand, within A4249_RS13830at 2791.676 kb on + strand, within A4249_RS13830at 2791.676 kb on + strand, within A4249_RS13830at 2791.676 kb on + strand, within A4249_RS13830at 2791.677 kb on - strand, within A4249_RS13830at 2791.677 kb on - strand, within A4249_RS13830at 2791.677 kb on - strand, within A4249_RS13830at 2791.677 kb on - strand, within A4249_RS13830at 2791.678 kb on + strand, within A4249_RS13830at 2791.678 kb on + strand, within A4249_RS13830at 2791.678 kb on + strand, within A4249_RS13830at 2791.679 kb on - strand, within A4249_RS13830at 2791.679 kb on - strand, within A4249_RS13830at 2791.679 kb on - strand, within A4249_RS13830at 2791.679 kb on - strand, within A4249_RS13830at 2791.679 kb on - strand, within A4249_RS13830at 2791.679 kb on - strand, within A4249_RS13830at 2791.694 kb on + strand, within A4249_RS13830at 2791.694 kb on + strand, within A4249_RS13830at 2791.694 kb on + strand, within A4249_RS13830at 2791.694 kb on + strand, within A4249_RS13830at 2791.694 kb on + strand, within A4249_RS13830at 2791.695 kb on - strand, within A4249_RS13830at 2791.695 kb on - strand, within A4249_RS13830at 2791.695 kb on - strand, within A4249_RS13830at 2791.695 kb on - strand, within A4249_RS13830at 2792.059 kb on + strand, within A4249_RS13835at 2792.059 kb on + strand, within A4249_RS13835at 2792.059 kb on + strand, within A4249_RS13835at 2792.059 kb on + strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.060 kb on - strand, within A4249_RS13835at 2792.083 kb on + strand, within A4249_RS13835at 2792.083 kb on + strand, within A4249_RS13835at 2792.084 kb on - strand, within A4249_RS13835at 2792.284 kb on + strand, within A4249_RS13835at 2792.284 kb on + strand, within A4249_RS13835at 2792.284 kb on + strand, within A4249_RS13835at 2792.285 kb on - strand, within A4249_RS13835at 2792.285 kb on - strand, within A4249_RS13835at 2792.285 kb on - strand, within A4249_RS13835at 2792.285 kb on - strand, within A4249_RS13835at 2792.333 kb on - strand, within A4249_RS13835at 2792.387 kb on - strand, within A4249_RS13835at 2792.387 kb on - strand, within A4249_RS13835at 2792.387 kb on - strand, within A4249_RS13835at 2792.387 kb on - strand, within A4249_RS13835at 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.513 kb on + strandat 2792.514 kb on - strandat 2792.514 kb on - strandat 2792.514 kb on - strandat 2792.514 kb on - strandat 2792.514 kb on - strandat 2792.514 kb on - strandat 2792.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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2,791,073 - +1.1
2,791,220 + A4249_RS13825 0.46 -0.0
2,791,220 + A4249_RS13825 0.46 -0.2
2,791,220 + A4249_RS13825 0.46 -1.2
2,791,220 + A4249_RS13825 0.46 +0.1
2,791,220 + A4249_RS13825 0.46 -0.1
2,791,220 + A4249_RS13825 0.46 -1.0
2,791,220 + A4249_RS13825 0.46 +0.0
2,791,220 + A4249_RS13825 0.46 -0.6
2,791,220 + A4249_RS13825 0.46 -0.1
2,791,220 + A4249_RS13825 0.46 -0.3
2,791,220 + A4249_RS13825 0.46 -0.9
2,791,220 + A4249_RS13825 0.46 +0.3
2,791,220 + A4249_RS13825 0.46 +0.3
2,791,221 - A4249_RS13825 0.47 -0.9
2,791,221 - A4249_RS13825 0.47 +0.5
2,791,221 - A4249_RS13825 0.47 +0.4
2,791,221 - A4249_RS13825 0.47 -0.5
2,791,221 - A4249_RS13825 0.47 -0.1
2,791,221 - A4249_RS13825 0.47 +0.8
2,791,221 - A4249_RS13825 0.47 -0.9
2,791,222 + A4249_RS13825 0.47 +0.3
2,791,222 + A4249_RS13825 0.47 -0.8
2,791,222 + A4249_RS13825 0.47 +0.0
2,791,222 + A4249_RS13825 0.47 +0.1
2,791,223 - A4249_RS13825 0.47 +1.0
2,791,223 - A4249_RS13825 0.47 -0.0
2,791,223 - A4249_RS13825 0.47 -0.2
2,791,223 - A4249_RS13825 0.47 -0.4
2,791,223 - A4249_RS13825 0.47 +0.6
2,791,223 - A4249_RS13825 0.47 -0.7
2,791,223 - A4249_RS13825 0.47 +0.2
2,791,223 - A4249_RS13825 0.47 +0.2
2,791,223 - A4249_RS13825 0.47 -1.2
2,791,259 + A4249_RS13825 0.62 -0.3
2,791,260 - A4249_RS13825 0.63 +0.1
2,791,310 + A4249_RS13825 0.84 +0.1
2,791,310 + A4249_RS13825 0.84 +0.6
2,791,311 - A4249_RS13825 0.84 -0.2
2,791,311 - A4249_RS13825 0.84 -1.2
2,791,311 - A4249_RS13825 0.84 -0.8
2,791,354 + -0.1
2,791,392 + -0.7
2,791,392 + +0.8
2,791,392 + -0.8
2,791,392 + +0.4
2,791,393 - -0.2
2,791,393 - -0.0
2,791,393 - -0.7
2,791,393 - +0.5
2,791,393 - +1.1
2,791,394 + +0.1
2,791,394 + -2.0
2,791,394 + +0.5
2,791,394 + +0.5
2,791,394 + -0.2
2,791,395 - +1.2
2,791,395 - -0.8
2,791,395 - -1.1
2,791,395 - -0.4
2,791,395 - -0.4
2,791,395 - +0.5
2,791,436 + -1.9
2,791,437 - +1.1
2,791,487 + A4249_RS13830 0.13 -1.0
2,791,487 + A4249_RS13830 0.13 -0.6
2,791,487 + A4249_RS13830 0.13 -0.2
2,791,487 + A4249_RS13830 0.13 +0.1
2,791,487 + A4249_RS13830 0.13 -0.0
2,791,488 - A4249_RS13830 0.13 -1.9
2,791,488 - A4249_RS13830 0.13 -0.9
2,791,488 - A4249_RS13830 0.13 -0.4
2,791,488 - A4249_RS13830 0.13 +0.7
2,791,488 - A4249_RS13830 0.13 -0.4
2,791,488 - A4249_RS13830 0.13 +0.1
2,791,676 + A4249_RS13830 0.56 -0.9
2,791,676 + A4249_RS13830 0.56 -1.2
2,791,676 + A4249_RS13830 0.56 -0.7
2,791,676 + A4249_RS13830 0.56 -0.5
2,791,677 - A4249_RS13830 0.56 +1.7
2,791,677 - A4249_RS13830 0.56 +0.1
2,791,677 - A4249_RS13830 0.56 +0.3
2,791,677 - A4249_RS13830 0.56 +0.6
2,791,678 + A4249_RS13830 0.56 -0.6
2,791,678 + A4249_RS13830 0.56 +0.3
2,791,678 + A4249_RS13830 0.56 +0.6
2,791,679 - A4249_RS13830 0.56 +1.5
2,791,679 - A4249_RS13830 0.56 -0.9
2,791,679 - A4249_RS13830 0.56 -0.3
2,791,679 - A4249_RS13830 0.56 -0.5
2,791,679 - A4249_RS13830 0.56 -0.8
2,791,679 - A4249_RS13830 0.56 -1.1
2,791,694 + A4249_RS13830 0.60 +1.0
2,791,694 + A4249_RS13830 0.60 +1.2
2,791,694 + A4249_RS13830 0.60 -0.1
2,791,694 + A4249_RS13830 0.60 -0.1
2,791,694 + A4249_RS13830 0.60 -0.9
2,791,695 - A4249_RS13830 0.60 +1.6
2,791,695 - A4249_RS13830 0.60 +0.1
2,791,695 - A4249_RS13830 0.60 -0.2
2,791,695 - A4249_RS13830 0.60 -0.4
2,792,059 + A4249_RS13835 0.31 -1.0
2,792,059 + A4249_RS13835 0.31 -0.3
2,792,059 + A4249_RS13835 0.31 -0.2
2,792,059 + A4249_RS13835 0.31 -0.1
2,792,060 - A4249_RS13835 0.31 +0.5
2,792,060 - A4249_RS13835 0.31 -0.6
2,792,060 - A4249_RS13835 0.31 +1.1
2,792,060 - A4249_RS13835 0.31 -1.9
2,792,060 - A4249_RS13835 0.31 -0.9
2,792,060 - A4249_RS13835 0.31 +0.4
2,792,060 - A4249_RS13835 0.31 -0.0
2,792,060 - A4249_RS13835 0.31 +0.0
2,792,060 - A4249_RS13835 0.31 +1.4
2,792,060 - A4249_RS13835 0.31 +1.3
2,792,060 - A4249_RS13835 0.31 -0.5
2,792,083 + A4249_RS13835 0.34 +0.6
2,792,083 + A4249_RS13835 0.34 -0.7
2,792,084 - A4249_RS13835 0.35 +0.4
2,792,284 + A4249_RS13835 0.67 +0.5
2,792,284 + A4249_RS13835 0.67 -0.6
2,792,284 + A4249_RS13835 0.67 +0.1
2,792,285 - A4249_RS13835 0.67 +1.0
2,792,285 - A4249_RS13835 0.67 -1.4
2,792,285 - A4249_RS13835 0.67 +1.4
2,792,285 - A4249_RS13835 0.67 -0.2
2,792,333 - A4249_RS13835 0.75 -1.1
2,792,387 - A4249_RS13835 0.84 +0.6
2,792,387 - A4249_RS13835 0.84 -0.3
2,792,387 - A4249_RS13835 0.84 +0.6
2,792,387 - A4249_RS13835 0.84 +0.3
2,792,513 + -0.5
2,792,513 + +0.1
2,792,513 + -0.6
2,792,513 + +0.1
2,792,513 + +0.4
2,792,513 + -0.9
2,792,513 + +1.5
2,792,513 + +0.5
2,792,514 - -0.9
2,792,514 - -0.4
2,792,514 - +0.3
2,792,514 - +0.4
2,792,514 - +1.3
2,792,514 - +1.1
2,792,514 - -0.4

Or see this region's nucleotide sequence