Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS13320 and A4249_RS13325 are separated by 187 nucleotides A4249_RS13325 and A4249_RS13330 are separated by 71 nucleotides A4249_RS13330 and A4249_RS13335 overlap by 4 nucleotides A4249_RS13335 and A4249_RS13340 are separated by 65 nucleotides
A4249_RS13320: A4249_RS13320 - DNA translocase FtsK 4TM domain-containing protein, at 2,689,407 to 2,691,818
_RS13320
A4249_RS13325: A4249_RS13325 - outer membrane lipoprotein carrier protein LolA, at 2,692,006 to 2,692,689
_RS13325
A4249_RS13330: A4249_RS13330 - hypothetical protein, at 2,692,761 to 2,693,312
_RS13330
A4249_RS13335: A4249_RS13335 - DUF2459 domain-containing protein, at 2,693,309 to 2,693,992
_RS13335
A4249_RS13340: A4249_RS13340 - 30S ribosome-binding factor RbfA, at 2,694,058 to 2,694,513
_RS13340
Position (kb)
2692
2693
2694 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2691.920 kb on + strand at 2691.921 kb on - strand at 2691.921 kb on - strand at 2691.921 kb on - strand at 2692.687 kb on + strand at 2692.687 kb on + strand at 2692.687 kb on + strand at 2692.687 kb on + strand at 2692.687 kb on + strand at 2692.688 kb on - strand at 2692.688 kb on - strand at 2692.688 kb on - strand at 2692.703 kb on - strand at 2692.703 kb on - strand at 2692.703 kb on - strand at 2692.703 kb on - strand at 2692.703 kb on - strand at 2692.749 kb on + strand at 2692.873 kb on + strand, within A4249_RS13330 at 2692.874 kb on - strand, within A4249_RS13330 at 2692.874 kb on - strand, within A4249_RS13330 at 2692.924 kb on + strand, within A4249_RS13330 at 2692.925 kb on - strand, within A4249_RS13330 at 2692.962 kb on + strand, within A4249_RS13330 at 2692.962 kb on + strand, within A4249_RS13330 at 2692.962 kb on + strand, within A4249_RS13330 at 2693.454 kb on + strand, within A4249_RS13335 at 2693.558 kb on + strand, within A4249_RS13335 at 2693.559 kb on - strand, within A4249_RS13335 at 2693.675 kb on + strand, within A4249_RS13335 at 2693.675 kb on + strand, within A4249_RS13335 at 2693.675 kb on + strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.676 kb on - strand, within A4249_RS13335 at 2693.788 kb on - strand, within A4249_RS13335 at 2693.990 kb on + strand at 2693.991 kb on - strand at 2693.991 kb on - strand at 2693.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 2,691,920 + -0.0 2,691,921 - +1.9 2,691,921 - -0.4 2,691,921 - -1.1 2,692,687 + -1.3 2,692,687 + +1.6 2,692,687 + +0.1 2,692,687 + +0.1 2,692,687 + -0.4 2,692,688 - +0.4 2,692,688 - +1.5 2,692,688 - -0.0 2,692,703 - +0.3 2,692,703 - -0.1 2,692,703 - +1.6 2,692,703 - +0.8 2,692,703 - +0.1 2,692,749 + +0.4 2,692,873 + A4249_RS13330 0.20 +0.3 2,692,874 - A4249_RS13330 0.20 +4.2 2,692,874 - A4249_RS13330 0.20 -0.6 2,692,924 + A4249_RS13330 0.30 +0.5 2,692,925 - A4249_RS13330 0.30 -0.7 2,692,962 + A4249_RS13330 0.36 -0.3 2,692,962 + A4249_RS13330 0.36 +1.6 2,692,962 + A4249_RS13330 0.36 +1.7 2,693,454 + A4249_RS13335 0.21 +0.3 2,693,558 + A4249_RS13335 0.36 -0.7 2,693,559 - A4249_RS13335 0.37 -1.2 2,693,675 + A4249_RS13335 0.54 -1.2 2,693,675 + A4249_RS13335 0.54 -0.5 2,693,675 + A4249_RS13335 0.54 -0.7 2,693,676 - A4249_RS13335 0.54 +1.3 2,693,676 - A4249_RS13335 0.54 -0.9 2,693,676 - A4249_RS13335 0.54 +0.1 2,693,676 - A4249_RS13335 0.54 +1.1 2,693,676 - A4249_RS13335 0.54 -1.3 2,693,676 - A4249_RS13335 0.54 +2.1 2,693,676 - A4249_RS13335 0.54 -1.1 2,693,788 - A4249_RS13335 0.70 +1.1 2,693,990 + -1.9 2,693,991 - +0.9 2,693,991 - +0.1 2,693,991 - -0.1
Or see this region's nucleotide sequence