Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12385

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12375 and A4249_RS12380 are separated by 3 nucleotidesA4249_RS12380 and A4249_RS12385 are separated by 54 nucleotidesA4249_RS12385 and A4249_RS12390 are separated by 164 nucleotidesA4249_RS12390 and A4249_RS12395 are separated by 13 nucleotides A4249_RS12375: A4249_RS12375 - hypothetical protein, at 2,483,283 to 2,483,534 _RS12375 A4249_RS12380: A4249_RS12380 - molybdopterin-synthase adenylyltransferase MoeB, at 2,483,538 to 2,484,272 _RS12380 A4249_RS12385: A4249_RS12385 - BLUF domain-containing protein, at 2,484,327 to 2,484,698 _RS12385 A4249_RS12390: A4249_RS12390 - ATP-dependent protease subunit HslV, at 2,484,863 to 2,485,423 _RS12390 A4249_RS12395: A4249_RS12395 - ATP-dependent Clp protease proteolytic subunit, at 2,485,437 to 2,486,018 _RS12395 Position (kb) 2484 2485Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2483.421 kb on + strand, within A4249_RS12375at 2483.421 kb on + strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.427 kb on + strand, within A4249_RS12375at 2483.428 kb on - strand, within A4249_RS12375at 2484.278 kb on + strandat 2484.278 kb on + strandat 2484.278 kb on + strandat 2484.278 kb on + strandat 2484.278 kb on + strandat 2484.279 kb on - strandat 2484.282 kb on + strandat 2484.282 kb on + strandat 2484.282 kb on + strandat 2484.282 kb on + strandat 2484.283 kb on - strandat 2484.503 kb on + strand, within A4249_RS12385at 2484.777 kb on - strandat 2484.798 kb on - strandat 2484.808 kb on + strandat 2485.101 kb on - strand, within A4249_RS12390at 2485.160 kb on + strand, within A4249_RS12390at 2485.161 kb on - strand, within A4249_RS12390at 2485.161 kb on - strand, within A4249_RS12390at 2485.250 kb on + strand, within A4249_RS12390at 2485.250 kb on + strand, within A4249_RS12390at 2485.250 kb on + strand, within A4249_RS12390at 2485.251 kb on - strand, within A4249_RS12390at 2485.251 kb on - strand, within A4249_RS12390at 2485.283 kb on + strand, within A4249_RS12390at 2485.283 kb on + strand, within A4249_RS12390at 2485.283 kb on + strand, within A4249_RS12390at 2485.283 kb on + strand, within A4249_RS12390at 2485.283 kb on + strand, within A4249_RS12390at 2485.284 kb on - strand, within A4249_RS12390at 2485.284 kb on - strand, within A4249_RS12390at 2485.284 kb on - strand, within A4249_RS12390at 2485.284 kb on - strand, within A4249_RS12390at 2485.382 kb on + strandat 2485.382 kb on + strandat 2485.489 kb on + strandat 2485.489 kb on + strandat 2485.489 kb on + strandat 2485.489 kb on + strandat 2485.490 kb on - strandat 2485.490 kb on - strandat 2485.490 kb on - strandat 2485.490 kb on - strandat 2485.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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2,483,421 + A4249_RS12375 0.55 -0.6
2,483,421 + A4249_RS12375 0.55 +1.2
2,483,422 - A4249_RS12375 0.55 -1.7
2,483,422 - A4249_RS12375 0.55 +1.0
2,483,422 - A4249_RS12375 0.55 -0.8
2,483,422 - A4249_RS12375 0.55 -1.0
2,483,427 + A4249_RS12375 0.57 -2.8
2,483,428 - A4249_RS12375 0.58 -1.4
2,484,278 + +0.3
2,484,278 + -0.5
2,484,278 + -0.2
2,484,278 + +0.7
2,484,278 + -1.0
2,484,279 - +1.4
2,484,282 + -1.0
2,484,282 + +0.5
2,484,282 + -1.2
2,484,282 + -1.0
2,484,283 - -0.8
2,484,503 + A4249_RS12385 0.47 -3.0
2,484,777 - +0.0
2,484,798 - -0.5
2,484,808 + +0.0
2,485,101 - A4249_RS12390 0.42 +1.2
2,485,160 + A4249_RS12390 0.53 -0.3
2,485,161 - A4249_RS12390 0.53 +1.0
2,485,161 - A4249_RS12390 0.53 -1.0
2,485,250 + A4249_RS12390 0.69 -2.0
2,485,250 + A4249_RS12390 0.69 -0.4
2,485,250 + A4249_RS12390 0.69 -1.0
2,485,251 - A4249_RS12390 0.69 -1.0
2,485,251 - A4249_RS12390 0.69 -1.0
2,485,283 + A4249_RS12390 0.75 -0.9
2,485,283 + A4249_RS12390 0.75 -1.3
2,485,283 + A4249_RS12390 0.75 +1.0
2,485,283 + A4249_RS12390 0.75 +0.0
2,485,283 + A4249_RS12390 0.75 +0.0
2,485,284 - A4249_RS12390 0.75 -2.3
2,485,284 - A4249_RS12390 0.75 -0.5
2,485,284 - A4249_RS12390 0.75 -1.2
2,485,284 - A4249_RS12390 0.75 -1.0
2,485,382 + +2.0
2,485,382 + +1.5
2,485,489 + +0.6
2,485,489 + +0.5
2,485,489 + -0.5
2,485,489 + -1.0
2,485,490 - -1.0
2,485,490 - +0.0
2,485,490 - +2.4
2,485,490 - +0.8
2,485,490 - +0.2

Or see this region's nucleotide sequence