Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12200 and A4249_RS12205 are separated by 37 nucleotides A4249_RS12205 and A4249_RS12210 overlap by 19 nucleotides A4249_RS12210 and A4249_RS12215 overlap by 4 nucleotides A4249_RS12215 and A4249_RS12220 are separated by 202 nucleotides
A4249_RS12200: A4249_RS12200 - fructose-6-phosphate aldolase, at 2,451,526 to 2,452,179
_RS12200
A4249_RS12205: A4249_RS12205 - DUF484 family protein, at 2,452,217 to 2,452,930
_RS12205
A4249_RS12210: A4249_RS12210 - tyrosine recombinase XerC, at 2,452,912 to 2,453,841
_RS12210
A4249_RS12215: A4249_RS12215 - hypothetical protein, at 2,453,838 to 2,454,182
_RS12215
A4249_RS12220: A4249_RS12220 - retroviral-like aspartic protease family protein, at 2,454,385 to 2,455,332
_RS12220
Position (kb)
2452
2453
2454 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2451.923 kb on + strand, within A4249_RS12200 at 2451.923 kb on + strand, within A4249_RS12200 at 2451.923 kb on + strand, within A4249_RS12200 at 2451.923 kb on + strand, within A4249_RS12200 at 2451.924 kb on - strand, within A4249_RS12200 at 2451.924 kb on - strand, within A4249_RS12200 at 2451.924 kb on - strand, within A4249_RS12200 at 2451.925 kb on - strand, within A4249_RS12200 at 2451.976 kb on + strand, within A4249_RS12200 at 2451.977 kb on - strand, within A4249_RS12200 at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.170 kb on + strand at 2452.171 kb on - strand at 2452.171 kb on - strand at 2452.171 kb on - strand at 2452.171 kb on - strand at 2452.171 kb on - strand at 2452.171 kb on - strand at 2452.177 kb on + strand at 2452.178 kb on - strand at 2452.178 kb on - strand at 2452.708 kb on - strand, within A4249_RS12205 at 2452.920 kb on + strand at 2453.008 kb on + strand, within A4249_RS12210 at 2453.008 kb on + strand, within A4249_RS12210 at 2453.029 kb on + strand, within A4249_RS12210 at 2453.030 kb on - strand, within A4249_RS12210 at 2453.030 kb on - strand, within A4249_RS12210 at 2453.387 kb on - strand, within A4249_RS12210 at 2453.530 kb on + strand, within A4249_RS12210 at 2453.779 kb on + strand at 2453.780 kb on - strand at 2453.840 kb on - strand at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.932 kb on + strand, within A4249_RS12215 at 2453.933 kb on - strand, within A4249_RS12215 at 2453.933 kb on - strand, within A4249_RS12215 at 2453.933 kb on - strand, within A4249_RS12215 at 2453.984 kb on - strand, within A4249_RS12215 at 2454.146 kb on + strand, within A4249_RS12215 at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.167 kb on + strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.168 kb on - strand at 2454.202 kb on + strand at 2454.210 kb on + strand at 2454.211 kb on - strand at 2454.233 kb on + strand at 2454.271 kb on + strand at 2454.272 kb on - strand at 2454.272 kb on - strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.293 kb on + strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.294 kb on - strand at 2454.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 2,451,923 + A4249_RS12200 0.61 +0.0 2,451,923 + A4249_RS12200 0.61 -0.9 2,451,923 + A4249_RS12200 0.61 -1.8 2,451,923 + A4249_RS12200 0.61 -0.8 2,451,924 - A4249_RS12200 0.61 -4.1 2,451,924 - A4249_RS12200 0.61 -2.2 2,451,924 - A4249_RS12200 0.61 -2.0 2,451,925 - A4249_RS12200 0.61 -3.3 2,451,976 + A4249_RS12200 0.69 -1.4 2,451,977 - A4249_RS12200 0.69 -3.1 2,452,170 + +0.2 2,452,170 + +0.0 2,452,170 + -0.6 2,452,170 + -0.7 2,452,170 + +0.5 2,452,170 + -0.2 2,452,170 + -1.1 2,452,170 + -3.0 2,452,170 + -0.5 2,452,171 - -0.3 2,452,171 - -2.0 2,452,171 - -2.3 2,452,171 - -1.6 2,452,171 - -0.8 2,452,171 - -0.4 2,452,177 + -0.2 2,452,178 - -0.4 2,452,178 - +0.2 2,452,708 - A4249_RS12205 0.69 +1.0 2,452,920 + -0.3 2,453,008 + A4249_RS12210 0.10 -1.5 2,453,008 + A4249_RS12210 0.10 -2.0 2,453,029 + A4249_RS12210 0.13 -0.7 2,453,030 - A4249_RS12210 0.13 -1.1 2,453,030 - A4249_RS12210 0.13 -1.0 2,453,387 - A4249_RS12210 0.51 +0.0 2,453,530 + A4249_RS12210 0.66 -0.5 2,453,779 + +0.0 2,453,780 - +0.0 2,453,840 - +0.2 2,453,932 + A4249_RS12215 0.27 +0.8 2,453,932 + A4249_RS12215 0.27 +0.5 2,453,932 + A4249_RS12215 0.27 +0.2 2,453,932 + A4249_RS12215 0.27 +0.4 2,453,932 + A4249_RS12215 0.27 +0.7 2,453,933 - A4249_RS12215 0.28 +1.0 2,453,933 - A4249_RS12215 0.28 +1.8 2,453,933 - A4249_RS12215 0.28 +0.0 2,453,984 - A4249_RS12215 0.42 -0.2 2,454,146 + A4249_RS12215 0.89 -0.1 2,454,167 + +0.1 2,454,167 + +0.0 2,454,167 + +0.3 2,454,167 + +1.0 2,454,167 + -0.6 2,454,167 + +0.9 2,454,167 + +0.8 2,454,167 + +0.1 2,454,168 - +0.5 2,454,168 - +1.2 2,454,168 - -1.0 2,454,168 - +0.0 2,454,168 - -1.5 2,454,168 - +0.4 2,454,168 - +0.8 2,454,168 - -1.5 2,454,168 - -0.2 2,454,168 - +0.8 2,454,168 - -0.3 2,454,202 + +0.8 2,454,210 + -0.3 2,454,211 - -1.8 2,454,233 + -0.4 2,454,271 + -0.6 2,454,272 - -0.7 2,454,272 - +0.3 2,454,293 + +0.8 2,454,293 + +1.0 2,454,293 + -1.0 2,454,293 + +0.7 2,454,293 + +3.7 2,454,293 + -1.4 2,454,293 + +0.5 2,454,293 + -2.2 2,454,293 + -0.2 2,454,293 + -2.3 2,454,293 + +0.3 2,454,293 + -0.4 2,454,293 + -0.5 2,454,293 + -0.2 2,454,293 + -1.0 2,454,293 + -1.1 2,454,293 + -1.4 2,454,293 + -1.3 2,454,293 + +1.0 2,454,293 + -0.4 2,454,293 + +0.5 2,454,294 - -2.0 2,454,294 - +1.2 2,454,294 - +0.7 2,454,294 - -0.3 2,454,294 - -1.0 2,454,294 - +0.3 2,454,294 - +1.8 2,454,294 - -0.9 2,454,294 - -0.9 2,454,294 - +1.0 2,454,294 - +2.2 2,454,294 - +2.7 2,454,294 - +0.0 2,454,294 - -1.0 2,454,294 - +0.8 2,454,294 - -1.1 2,454,294 - +0.3 2,454,294 - +0.8 2,454,294 - +1.4 2,454,294 - -0.6 2,454,294 - -0.3 2,454,322 + -1.5
Or see this region's nucleotide sequence