Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11130

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11125 and A4249_RS11130 are separated by 71 nucleotidesA4249_RS11130 and A4249_RS11135 are separated by 1 nucleotidesA4249_RS11135 and A4249_RS11140 overlap by 4 nucleotides A4249_RS11125: A4249_RS11125 - glycosyltransferase family 9 protein, at 2,238,868 to 2,239,830 _RS11125 A4249_RS11130: A4249_RS11130 - alpha/beta hydrolase, at 2,239,902 to 2,240,642 _RS11130 A4249_RS11135: A4249_RS11135 - N-carbamoylputrescine amidase, at 2,240,644 to 2,241,507 _RS11135 A4249_RS11140: A4249_RS11140 - agmatine deiminase family protein, at 2,241,504 to 2,242,523 _RS11140 Position (kb) 2239 2240 2241Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2238.943 kb on + strandat 2238.944 kb on - strandat 2238.944 kb on - strandat 2238.944 kb on - strandat 2238.993 kb on + strand, within A4249_RS11125at 2238.994 kb on - strand, within A4249_RS11125at 2238.994 kb on - strand, within A4249_RS11125at 2238.994 kb on - strand, within A4249_RS11125at 2239.020 kb on - strand, within A4249_RS11125at 2239.020 kb on - strand, within A4249_RS11125at 2239.520 kb on + strand, within A4249_RS11125at 2239.521 kb on - strand, within A4249_RS11125at 2239.521 kb on - strand, within A4249_RS11125at 2239.550 kb on + strand, within A4249_RS11125at 2239.550 kb on + strand, within A4249_RS11125at 2239.550 kb on + strand, within A4249_RS11125at 2239.551 kb on - strand, within A4249_RS11125at 2239.551 kb on - strand, within A4249_RS11125at 2239.551 kb on - strand, within A4249_RS11125at 2240.077 kb on - strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.385 kb on + strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.386 kb on - strand, within A4249_RS11130at 2240.640 kb on + strandat 2240.640 kb on + strandat 2240.641 kb on - strandat 2240.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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2,238,943 + -3.2
2,238,944 - -2.7
2,238,944 - -2.9
2,238,944 - -3.2
2,238,993 + A4249_RS11125 0.13 -2.8
2,238,994 - A4249_RS11125 0.13 -1.3
2,238,994 - A4249_RS11125 0.13 -2.6
2,238,994 - A4249_RS11125 0.13 -3.1
2,239,020 - A4249_RS11125 0.16 -2.8
2,239,020 - A4249_RS11125 0.16 -2.5
2,239,520 + A4249_RS11125 0.68 -3.2
2,239,521 - A4249_RS11125 0.68 -2.8
2,239,521 - A4249_RS11125 0.68 -3.3
2,239,550 + A4249_RS11125 0.71 -3.2
2,239,550 + A4249_RS11125 0.71 -3.2
2,239,550 + A4249_RS11125 0.71 -3.3
2,239,551 - A4249_RS11125 0.71 -3.2
2,239,551 - A4249_RS11125 0.71 -3.2
2,239,551 - A4249_RS11125 0.71 -2.9
2,240,077 - A4249_RS11130 0.24 -1.0
2,240,385 + A4249_RS11130 0.65 +0.6
2,240,385 + A4249_RS11130 0.65 +0.5
2,240,385 + A4249_RS11130 0.65 +2.0
2,240,385 + A4249_RS11130 0.65 -0.7
2,240,385 + A4249_RS11130 0.65 -0.4
2,240,385 + A4249_RS11130 0.65 -0.2
2,240,385 + A4249_RS11130 0.65 -0.6
2,240,385 + A4249_RS11130 0.65 +0.2
2,240,385 + A4249_RS11130 0.65 +0.4
2,240,385 + A4249_RS11130 0.65 -0.8
2,240,385 + A4249_RS11130 0.65 -1.3
2,240,385 + A4249_RS11130 0.65 +0.3
2,240,386 - A4249_RS11130 0.65 +0.1
2,240,386 - A4249_RS11130 0.65 -0.5
2,240,386 - A4249_RS11130 0.65 -0.7
2,240,386 - A4249_RS11130 0.65 -0.2
2,240,386 - A4249_RS11130 0.65 -0.6
2,240,386 - A4249_RS11130 0.65 +0.5
2,240,386 - A4249_RS11130 0.65 -1.6
2,240,386 - A4249_RS11130 0.65 +0.4
2,240,386 - A4249_RS11130 0.65 -0.4
2,240,640 + -0.1
2,240,640 + -2.3
2,240,641 - +0.3
2,240,641 - -0.3

Or see this region's nucleotide sequence