Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09820 and A4249_RS09825 are separated by 82 nucleotides A4249_RS09825 and A4249_RS09830 are separated by 4 nucleotides
A4249_RS09820: A4249_RS09820 - branched-chain amino acid aminotransferase, at 1,957,106 to 1,957,984
_RS09820
A4249_RS09825: A4249_RS09825 - response regulator transcription factor, at 1,958,067 to 1,958,804
_RS09825
A4249_RS09830: A4249_RS09830 - ATP-binding protein, at 1,958,809 to 1,960,176
_RS09830
Position (kb)
1958
1959 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1957.107 kb on + strand at 1957.107 kb on + strand at 1957.107 kb on + strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1957.108 kb on - strand at 1958.017 kb on - strand at 1959.020 kb on - strand, within A4249_RS09830 at 1959.020 kb on - strand, within A4249_RS09830 at 1959.020 kb on - strand, within A4249_RS09830 at 1959.020 kb on - strand, within A4249_RS09830 at 1959.020 kb on - strand, within A4249_RS09830 at 1959.200 kb on - strand, within A4249_RS09830 at 1959.230 kb on - strand, within A4249_RS09830 at 1959.312 kb on + strand, within A4249_RS09830 at 1959.312 kb on + strand, within A4249_RS09830 at 1959.313 kb on - strand, within A4249_RS09830 at 1959.313 kb on - strand, within A4249_RS09830 at 1959.313 kb on - strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.669 kb on + strand, within A4249_RS09830 at 1959.670 kb on - strand, within A4249_RS09830 at 1959.670 kb on - strand, within A4249_RS09830 at 1959.670 kb on - strand, within A4249_RS09830 at 1959.670 kb on - strand, within A4249_RS09830
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 1,957,107 + +2.8 1,957,107 + -0.6 1,957,107 + -0.2 1,957,108 - -0.3 1,957,108 - -0.0 1,957,108 - +0.4 1,957,108 - +0.6 1,957,108 - -1.5 1,957,108 - -0.0 1,957,108 - +0.1 1,957,108 - +0.1 1,958,017 - +1.2 1,959,020 - A4249_RS09830 0.15 -0.6 1,959,020 - A4249_RS09830 0.15 -1.3 1,959,020 - A4249_RS09830 0.15 +0.6 1,959,020 - A4249_RS09830 0.15 -2.0 1,959,020 - A4249_RS09830 0.15 +0.2 1,959,200 - A4249_RS09830 0.29 -0.9 1,959,230 - A4249_RS09830 0.31 -1.6 1,959,312 + A4249_RS09830 0.37 -1.6 1,959,312 + A4249_RS09830 0.37 -1.8 1,959,313 - A4249_RS09830 0.37 +0.3 1,959,313 - A4249_RS09830 0.37 -0.0 1,959,313 - A4249_RS09830 0.37 -2.4 1,959,669 + A4249_RS09830 0.63 -0.0 1,959,669 + A4249_RS09830 0.63 -3.4 1,959,669 + A4249_RS09830 0.63 -2.0 1,959,669 + A4249_RS09830 0.63 -1.6 1,959,669 + A4249_RS09830 0.63 -0.0 1,959,669 + A4249_RS09830 0.63 +0.6 1,959,669 + A4249_RS09830 0.63 -2.8 1,959,669 + A4249_RS09830 0.63 -2.4 1,959,670 - A4249_RS09830 0.63 +1.0 1,959,670 - A4249_RS09830 0.63 -2.2 1,959,670 - A4249_RS09830 0.63 -1.6 1,959,670 - A4249_RS09830 0.63 -1.0
Or see this region's nucleotide sequence