Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09105

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09095 and A4249_RS09100 are separated by 130 nucleotidesA4249_RS09100 and A4249_RS09105 are separated by 76 nucleotidesA4249_RS09105 and A4249_RS09110 are separated by 96 nucleotides A4249_RS09095: A4249_RS09095 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 1,819,845 to 1,820,978 _RS09095 A4249_RS09100: A4249_RS09100 - aa3-type cytochrome c oxidase subunit IV, at 1,821,109 to 1,821,381 _RS09100 A4249_RS09105: A4249_RS09105 - M3 family oligoendopeptidase, at 1,821,458 to 1,823,251 _RS09105 A4249_RS09110: A4249_RS09110 - DUF4153 domain-containing protein, at 1,823,348 to 1,825,117 _RS09110 Position (kb) 1821 1822 1823 1824Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1820.522 kb on - strand, within A4249_RS09095at 1820.527 kb on + strand, within A4249_RS09095at 1820.527 kb on + strand, within A4249_RS09095at 1820.527 kb on + strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.528 kb on - strand, within A4249_RS09095at 1820.824 kb on + strand, within A4249_RS09095at 1820.825 kb on - strand, within A4249_RS09095at 1820.825 kb on - strand, within A4249_RS09095at 1821.013 kb on + strandat 1821.285 kb on - strand, within A4249_RS09100at 1821.285 kb on - strand, within A4249_RS09100at 1821.309 kb on - strand, within A4249_RS09100at 1821.312 kb on + strand, within A4249_RS09100at 1821.313 kb on - strand, within A4249_RS09100at 1821.313 kb on - strand, within A4249_RS09100at 1821.313 kb on - strand, within A4249_RS09100at 1821.326 kb on + strand, within A4249_RS09100at 1821.326 kb on + strand, within A4249_RS09100at 1821.327 kb on - strand, within A4249_RS09100at 1821.327 kb on - strand, within A4249_RS09100at 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.413 kb on + strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.414 kb on - strandat 1821.567 kb on + strandat 1821.567 kb on + strandat 1821.568 kb on - strandat 1821.568 kb on - strandat 1821.679 kb on - strand, within A4249_RS09105at 1821.679 kb on - strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.684 kb on + strand, within A4249_RS09105at 1821.685 kb on - strand, within A4249_RS09105at 1821.685 kb on - strand, within A4249_RS09105at 1821.685 kb on - strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.690 kb on + strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.691 kb on - strand, within A4249_RS09105at 1821.720 kb on + strand, within A4249_RS09105at 1821.720 kb on + strand, within A4249_RS09105at 1821.720 kb on + strand, within A4249_RS09105at 1821.721 kb on - strand, within A4249_RS09105at 1821.721 kb on - strand, within A4249_RS09105at 1821.721 kb on - strand, within A4249_RS09105at 1821.738 kb on + strand, within A4249_RS09105at 1821.739 kb on - strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.131 kb on + strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.132 kb on - strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.164 kb on + strand, within A4249_RS09105at 1822.165 kb on - strand, within A4249_RS09105at 1822.165 kb on - strand, within A4249_RS09105at 1822.214 kb on - strand, within A4249_RS09105at 1822.271 kb on + strand, within A4249_RS09105at 1822.271 kb on + strand, within A4249_RS09105at 1822.272 kb on - strand, within A4249_RS09105at 1822.389 kb on + strand, within A4249_RS09105at 1822.390 kb on - strand, within A4249_RS09105at 1822.390 kb on - strand, within A4249_RS09105at 1822.390 kb on - strand, within A4249_RS09105at 1822.392 kb on + strand, within A4249_RS09105at 1822.393 kb on - strand, within A4249_RS09105at 1823.004 kb on + strand, within A4249_RS09105at 1823.043 kb on + strand, within A4249_RS09105at 1823.044 kb on - strand, within A4249_RS09105at 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.190 kb on + strandat 1823.191 kb on - strandat 1823.225 kb on - strandat 1823.295 kb on + strandat 1823.295 kb on + strandat 1823.295 kb on + strandat 1823.296 kb on - strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.453 kb on + strandat 1823.454 kb on - strandat 1823.454 kb on - strandat 1823.454 kb on - strandat 1823.462 kb on + strandat 1823.462 kb on + strandat 1823.463 kb on - strandat 1823.463 kb on - strandat 1823.463 kb on - strandat 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.537 kb on + strand, within A4249_RS09110at 1823.589 kb on + strand, within A4249_RS09110at 1823.589 kb on + strand, within A4249_RS09110at 1823.711 kb on - strand, within A4249_RS09110at 1823.728 kb on + strand, within A4249_RS09110at 1823.728 kb on + strand, within A4249_RS09110at 1823.729 kb on - strand, within A4249_RS09110at 1823.729 kb on - strand, within A4249_RS09110at 1823.784 kb on - strand, within A4249_RS09110at 1823.793 kb on - strand, within A4249_RS09110at 1824.120 kb on + strand, within A4249_RS09110at 1824.121 kb on - strand, within A4249_RS09110at 1824.194 kb on + strand, within A4249_RS09110at 1824.194 kb on + strand, within A4249_RS09110at 1824.194 kb on + strand, within A4249_RS09110at 1824.195 kb on - strand, within A4249_RS09110at 1824.195 kb on - strand, within A4249_RS09110at 1824.195 kb on - strand, within A4249_RS09110

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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1,820,522 - A4249_RS09095 0.60 +1.0
1,820,527 + A4249_RS09095 0.60 +1.5
1,820,527 + A4249_RS09095 0.60 -0.2
1,820,527 + A4249_RS09095 0.60 -0.6
1,820,528 - A4249_RS09095 0.60 +0.3
1,820,528 - A4249_RS09095 0.60 +0.4
1,820,528 - A4249_RS09095 0.60 -0.2
1,820,528 - A4249_RS09095 0.60 -0.6
1,820,824 + A4249_RS09095 0.86 -0.5
1,820,825 - A4249_RS09095 0.86 -0.1
1,820,825 - A4249_RS09095 0.86 -0.3
1,821,013 + +0.5
1,821,285 - A4249_RS09100 0.64 +2.8
1,821,285 - A4249_RS09100 0.64 -1.6
1,821,309 - A4249_RS09100 0.73 -2.5
1,821,312 + A4249_RS09100 0.74 +2.8
1,821,313 - A4249_RS09100 0.75 -1.5
1,821,313 - A4249_RS09100 0.75 -1.3
1,821,313 - A4249_RS09100 0.75 -0.5
1,821,326 + A4249_RS09100 0.79 -2.0
1,821,326 + A4249_RS09100 0.79 -1.0
1,821,327 - A4249_RS09100 0.80 -0.3
1,821,327 - A4249_RS09100 0.80 -1.1
1,821,413 + +3.1
1,821,413 + +0.2
1,821,413 + +0.4
1,821,413 + +0.4
1,821,413 + -1.5
1,821,413 + +1.0
1,821,414 - -0.6
1,821,414 - +0.8
1,821,414 - +0.1
1,821,414 - +0.5
1,821,414 - +0.2
1,821,414 - +2.3
1,821,414 - +0.4
1,821,414 - -0.5
1,821,414 - +1.1
1,821,414 - -0.9
1,821,414 - +0.4
1,821,567 + +0.6
1,821,567 + +1.1
1,821,568 - +0.5
1,821,568 - +0.5
1,821,679 - A4249_RS09105 0.12 -1.0
1,821,679 - A4249_RS09105 0.12 +2.5
1,821,684 + A4249_RS09105 0.13 -0.5
1,821,684 + A4249_RS09105 0.13 -0.0
1,821,684 + A4249_RS09105 0.13 -0.0
1,821,684 + A4249_RS09105 0.13 -0.0
1,821,684 + A4249_RS09105 0.13 -0.7
1,821,684 + A4249_RS09105 0.13 -0.0
1,821,684 + A4249_RS09105 0.13 +2.5
1,821,685 - A4249_RS09105 0.13 -0.0
1,821,685 - A4249_RS09105 0.13 +0.3
1,821,685 - A4249_RS09105 0.13 -2.0
1,821,690 + A4249_RS09105 0.13 +1.8
1,821,690 + A4249_RS09105 0.13 +0.1
1,821,690 + A4249_RS09105 0.13 +0.4
1,821,690 + A4249_RS09105 0.13 +0.5
1,821,690 + A4249_RS09105 0.13 -0.0
1,821,690 + A4249_RS09105 0.13 +0.6
1,821,690 + A4249_RS09105 0.13 -0.4
1,821,690 + A4249_RS09105 0.13 +0.2
1,821,690 + A4249_RS09105 0.13 -0.0
1,821,690 + A4249_RS09105 0.13 +3.7
1,821,690 + A4249_RS09105 0.13 +0.1
1,821,690 + A4249_RS09105 0.13 -0.1
1,821,690 + A4249_RS09105 0.13 -0.0
1,821,690 + A4249_RS09105 0.13 -0.7
1,821,690 + A4249_RS09105 0.13 +0.2
1,821,690 + A4249_RS09105 0.13 +0.6
1,821,690 + A4249_RS09105 0.13 +0.1
1,821,690 + A4249_RS09105 0.13 +0.4
1,821,690 + A4249_RS09105 0.13 -0.3
1,821,690 + A4249_RS09105 0.13 +1.5
1,821,691 - A4249_RS09105 0.13 -0.0
1,821,691 - A4249_RS09105 0.13 -0.4
1,821,691 - A4249_RS09105 0.13 +0.6
1,821,691 - A4249_RS09105 0.13 +0.6
1,821,691 - A4249_RS09105 0.13 -1.4
1,821,691 - A4249_RS09105 0.13 -0.1
1,821,691 - A4249_RS09105 0.13 +0.4
1,821,691 - A4249_RS09105 0.13 -1.2
1,821,691 - A4249_RS09105 0.13 +1.3
1,821,691 - A4249_RS09105 0.13 -0.2
1,821,720 + A4249_RS09105 0.15 +0.4
1,821,720 + A4249_RS09105 0.15 +1.0
1,821,720 + A4249_RS09105 0.15 +0.5
1,821,721 - A4249_RS09105 0.15 -0.0
1,821,721 - A4249_RS09105 0.15 +0.2
1,821,721 - A4249_RS09105 0.15 -0.0
1,821,738 + A4249_RS09105 0.16 -0.2
1,821,739 - A4249_RS09105 0.16 +2.8
1,822,131 + A4249_RS09105 0.38 +1.5
1,822,131 + A4249_RS09105 0.38 -1.6
1,822,131 + A4249_RS09105 0.38 -0.6
1,822,131 + A4249_RS09105 0.38 +0.3
1,822,131 + A4249_RS09105 0.38 +2.0
1,822,132 - A4249_RS09105 0.38 -0.3
1,822,132 - A4249_RS09105 0.38 +1.2
1,822,132 - A4249_RS09105 0.38 -0.0
1,822,132 - A4249_RS09105 0.38 -1.6
1,822,132 - A4249_RS09105 0.38 -0.4
1,822,132 - A4249_RS09105 0.38 +1.4
1,822,164 + A4249_RS09105 0.39 -0.4
1,822,164 + A4249_RS09105 0.39 +0.2
1,822,164 + A4249_RS09105 0.39 -1.2
1,822,164 + A4249_RS09105 0.39 +0.1
1,822,164 + A4249_RS09105 0.39 -0.0
1,822,165 - A4249_RS09105 0.39 +0.9
1,822,165 - A4249_RS09105 0.39 -1.0
1,822,214 - A4249_RS09105 0.42 +0.8
1,822,271 + A4249_RS09105 0.45 +0.3
1,822,271 + A4249_RS09105 0.45 -0.4
1,822,272 - A4249_RS09105 0.45 +0.7
1,822,389 + A4249_RS09105 0.52 +0.7
1,822,390 - A4249_RS09105 0.52 +0.7
1,822,390 - A4249_RS09105 0.52 -1.3
1,822,390 - A4249_RS09105 0.52 -2.0
1,822,392 + A4249_RS09105 0.52 +1.1
1,822,393 - A4249_RS09105 0.52 +0.2
1,823,004 + A4249_RS09105 0.86 +1.1
1,823,043 + A4249_RS09105 0.88 -0.0
1,823,044 - A4249_RS09105 0.88 +0.4
1,823,190 + -0.6
1,823,190 + -0.8
1,823,190 + +0.5
1,823,190 + +0.4
1,823,190 + -0.0
1,823,191 - +1.3
1,823,225 - +0.2
1,823,295 + -0.3
1,823,295 + +0.8
1,823,295 + +0.3
1,823,296 - -0.1
1,823,453 + -0.0
1,823,453 + +0.4
1,823,453 + +0.1
1,823,453 + -0.5
1,823,453 + +0.2
1,823,453 + +1.0
1,823,454 - +0.3
1,823,454 - +0.6
1,823,454 - +0.1
1,823,462 + -0.5
1,823,462 + -0.6
1,823,463 - -0.1
1,823,463 - +0.1
1,823,463 - +0.2
1,823,537 + A4249_RS09110 0.11 -0.2
1,823,537 + A4249_RS09110 0.11 +0.2
1,823,537 + A4249_RS09110 0.11 -1.5
1,823,537 + A4249_RS09110 0.11 +0.1
1,823,537 + A4249_RS09110 0.11 -0.3
1,823,537 + A4249_RS09110 0.11 +0.5
1,823,589 + A4249_RS09110 0.14 +0.6
1,823,589 + A4249_RS09110 0.14 -0.2
1,823,711 - A4249_RS09110 0.21 +0.5
1,823,728 + A4249_RS09110 0.21 -0.6
1,823,728 + A4249_RS09110 0.21 -0.4
1,823,729 - A4249_RS09110 0.22 +0.3
1,823,729 - A4249_RS09110 0.22 -1.4
1,823,784 - A4249_RS09110 0.25 -0.0
1,823,793 - A4249_RS09110 0.25 -0.0
1,824,120 + A4249_RS09110 0.44 +0.5
1,824,121 - A4249_RS09110 0.44 -0.5
1,824,194 + A4249_RS09110 0.48 -0.9
1,824,194 + A4249_RS09110 0.48 -0.9
1,824,194 + A4249_RS09110 0.48 +0.4
1,824,195 - A4249_RS09110 0.48 +0.1
1,824,195 - A4249_RS09110 0.48 +2.5
1,824,195 - A4249_RS09110 0.48 -2.0

Or see this region's nucleotide sequence