Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09000 and A4249_RS09005 are separated by 134 nucleotides A4249_RS09005 and A4249_RS09010 are separated by 86 nucleotides A4249_RS09010 and A4249_RS09015 are separated by 49 nucleotides A4249_RS09015 and A4249_RS16935 are separated by 67 nucleotides
A4249_RS09000: A4249_RS09000 - response regulator, at 1,802,939 to 1,805,227
_RS09000
A4249_RS09005: A4249_RS09005 - 50S ribosomal protein L25/general stress protein Ctc, at 1,805,362 to 1,805,994
_RS09005
A4249_RS09010: A4249_RS09010 - aminoacyl-tRNA hydrolase, at 1,806,081 to 1,806,689
_RS09010
A4249_RS09015: A4249_RS09015 - hypothetical protein, at 1,806,739 to 1,807,125
_RS09015
A4249_RS16935: A4249_RS16935 - Plug domain-containing protein, at 1,807,193 to 1,807,714
_RS16935
A4249_RS09020: A4249_RS09020 - TonB-dependent receptor, at 1,807,648 to 1,809,291
_RS09020
Position (kb) 1806
1807 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1805.714 kb on - strand, within A4249_RS09005 at 1805.714 kb on - strand, within A4249_RS09005 at 1806.688 kb on - strand at 1806.705 kb on - strand at 1806.728 kb on - strand at 1806.728 kb on - strand at 1807.045 kb on + strand, within A4249_RS09015 at 1807.046 kb on - strand, within A4249_RS09015 at 1807.046 kb on - strand, within A4249_RS09015 at 1807.046 kb on - strand, within A4249_RS09015 at 1807.046 kb on - strand, within A4249_RS09015 at 1807.208 kb on - strand at 1807.419 kb on - strand, within A4249_RS16935 at 1807.419 kb on - strand, within A4249_RS16935
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 1,805,714 - A4249_RS09005 0.56 +1.0 1,805,714 - A4249_RS09005 0.56 -1.0 1,806,688 - +0.7 1,806,705 - +0.3 1,806,728 - +1.0 1,806,728 - +0.6 1,807,045 + A4249_RS09015 0.79 -2.4 1,807,046 - A4249_RS09015 0.79 -0.6 1,807,046 - A4249_RS09015 0.79 +0.2 1,807,046 - A4249_RS09015 0.79 +1.5 1,807,046 - A4249_RS09015 0.79 -3.9 1,807,208 - -0.1 1,807,419 - A4249_RS16935 0.43 +0.8 1,807,419 - A4249_RS16935 0.43 -1.4
Or see this region's nucleotide sequence