Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08630

Experiment: Tween 20 (C), 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS17050 and A4249_RS08630 are separated by 4 nucleotidesA4249_RS08630 and A4249_RS08635 are separated by 48 nucleotides A4249_RS17050: A4249_RS17050 - flagellar hook-length control protein FliK, at 1,731,897 to 1,733,831 _RS17050 A4249_RS08630: A4249_RS08630 - flagellar hook capping FlgD N-terminal domain-containing protein, at 1,733,836 to 1,734,564 _RS08630 A4249_RS08635: A4249_RS08635 - flagellar hook protein FlgE, at 1,734,613 to 1,736,370 _RS08635 Position (kb) 1733 1734 1735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.097 kb on + strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.098 kb on - strand, within A4249_RS08630at 1734.166 kb on + strand, within A4249_RS08630at 1734.166 kb on + strand, within A4249_RS08630at 1734.167 kb on - strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.270 kb on + strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.271 kb on - strand, within A4249_RS08630at 1734.328 kb on + strand, within A4249_RS08630at 1734.328 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.418 kb on + strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.419 kb on - strand, within A4249_RS08630at 1734.433 kb on + strand, within A4249_RS08630at 1734.433 kb on + strand, within A4249_RS08630at 1734.434 kb on - strand, within A4249_RS08630at 1734.434 kb on - strand, within A4249_RS08630at 1734.434 kb on - strand, within A4249_RS08630at 1734.593 kb on + strandat 1734.593 kb on + strandat 1734.593 kb on + strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.594 kb on - strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.597 kb on + strandat 1734.598 kb on - strandat 1734.598 kb on - strandat 1734.704 kb on + strandat 1734.705 kb on - strandat 1734.705 kb on - strandat 1734.705 kb on - strandat 1734.705 kb on - strandat 1734.718 kb on + strandat 1734.718 kb on + strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.719 kb on - strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.781 kb on + strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.782 kb on - strandat 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.817 kb on + strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.818 kb on - strand, within A4249_RS08635at 1734.846 kb on + strand, within A4249_RS08635at 1734.846 kb on + strand, within A4249_RS08635at 1734.847 kb on - strand, within A4249_RS08635at 1734.847 kb on - strand, within A4249_RS08635at 1734.847 kb on - strand, within A4249_RS08635at 1734.847 kb on - strand, within A4249_RS08635at 1734.979 kb on + strand, within A4249_RS08635at 1734.979 kb on + strand, within A4249_RS08635at 1734.979 kb on + strand, within A4249_RS08635at 1734.980 kb on - strand, within A4249_RS08635at 1734.980 kb on - strand, within A4249_RS08635at 1734.980 kb on - strand, within A4249_RS08635at 1735.003 kb on + strand, within A4249_RS08635at 1735.003 kb on + strand, within A4249_RS08635at 1735.003 kb on + strand, within A4249_RS08635at 1735.003 kb on + strand, within A4249_RS08635at 1735.003 kb on + strand, within A4249_RS08635at 1735.003 kb on + strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.004 kb on - strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.186 kb on + strand, within A4249_RS08635at 1735.187 kb on - strand, within A4249_RS08635at 1735.187 kb on - strand, within A4249_RS08635at 1735.187 kb on - strand, within A4249_RS08635at 1735.187 kb on - strand, within A4249_RS08635at 1735.187 kb on - strand, within A4249_RS08635at 1735.243 kb on + strand, within A4249_RS08635at 1735.438 kb on + strand, within A4249_RS08635at 1735.439 kb on - strand, within A4249_RS08635at 1735.439 kb on - strand, within A4249_RS08635at 1735.439 kb on - strand, within A4249_RS08635at 1735.439 kb on - strand, within A4249_RS08635at 1735.440 kb on + strand, within A4249_RS08635at 1735.440 kb on + strand, within A4249_RS08635at 1735.440 kb on + strand, within A4249_RS08635at 1735.440 kb on + strand, within A4249_RS08635at 1735.441 kb on - strand, within A4249_RS08635at 1735.441 kb on - strand, within A4249_RS08635at 1735.441 kb on - strand, within A4249_RS08635at 1735.441 kb on - strand, within A4249_RS08635at 1735.495 kb on + strand, within A4249_RS08635at 1735.495 kb on + strand, within A4249_RS08635at 1735.495 kb on + strand, within A4249_RS08635at 1735.495 kb on + strand, within A4249_RS08635at 1735.495 kb on + strand, within A4249_RS08635at 1735.496 kb on - strand, within A4249_RS08635at 1735.496 kb on - strand, within A4249_RS08635at 1735.525 kb on + strand, within A4249_RS08635at 1735.526 kb on - strand, within A4249_RS08635at 1735.526 kb on - strand, within A4249_RS08635at 1735.526 kb on - strand, within A4249_RS08635at 1735.526 kb on - strand, within A4249_RS08635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
remove
1,734,097 + A4249_RS08630 0.36 -0.0
1,734,097 + A4249_RS08630 0.36 +0.6
1,734,097 + A4249_RS08630 0.36 -0.9
1,734,097 + A4249_RS08630 0.36 +0.3
1,734,097 + A4249_RS08630 0.36 -0.0
1,734,097 + A4249_RS08630 0.36 +0.6
1,734,098 - A4249_RS08630 0.36 -0.3
1,734,098 - A4249_RS08630 0.36 +0.8
1,734,098 - A4249_RS08630 0.36 -1.4
1,734,098 - A4249_RS08630 0.36 +0.8
1,734,098 - A4249_RS08630 0.36 +1.1
1,734,098 - A4249_RS08630 0.36 -0.2
1,734,098 - A4249_RS08630 0.36 +1.0
1,734,166 + A4249_RS08630 0.45 +0.9
1,734,166 + A4249_RS08630 0.45 +0.1
1,734,167 - A4249_RS08630 0.45 -0.6
1,734,270 + A4249_RS08630 0.60 +0.2
1,734,270 + A4249_RS08630 0.60 +0.3
1,734,270 + A4249_RS08630 0.60 +0.7
1,734,270 + A4249_RS08630 0.60 +0.3
1,734,270 + A4249_RS08630 0.60 +0.2
1,734,270 + A4249_RS08630 0.60 +0.5
1,734,270 + A4249_RS08630 0.60 -0.3
1,734,270 + A4249_RS08630 0.60 -0.8
1,734,270 + A4249_RS08630 0.60 +0.3
1,734,270 + A4249_RS08630 0.60 -0.3
1,734,271 - A4249_RS08630 0.60 -0.0
1,734,271 - A4249_RS08630 0.60 +0.5
1,734,271 - A4249_RS08630 0.60 -0.9
1,734,271 - A4249_RS08630 0.60 +1.6
1,734,271 - A4249_RS08630 0.60 +1.0
1,734,271 - A4249_RS08630 0.60 -1.4
1,734,271 - A4249_RS08630 0.60 -0.0
1,734,271 - A4249_RS08630 0.60 +1.1
1,734,271 - A4249_RS08630 0.60 +1.6
1,734,271 - A4249_RS08630 0.60 +0.1
1,734,328 + A4249_RS08630 0.67 -0.2
1,734,328 + A4249_RS08630 0.67 +0.2
1,734,418 + A4249_RS08630 0.80 +0.4
1,734,418 + A4249_RS08630 0.80 +0.4
1,734,418 + A4249_RS08630 0.80 +0.4
1,734,418 + A4249_RS08630 0.80 -0.0
1,734,418 + A4249_RS08630 0.80 -0.5
1,734,418 + A4249_RS08630 0.80 -0.0
1,734,418 + A4249_RS08630 0.80 -0.2
1,734,418 + A4249_RS08630 0.80 +0.6
1,734,419 - A4249_RS08630 0.80 -0.0
1,734,419 - A4249_RS08630 0.80 +0.9
1,734,419 - A4249_RS08630 0.80 +0.6
1,734,419 - A4249_RS08630 0.80 +0.5
1,734,419 - A4249_RS08630 0.80 -0.8
1,734,433 + A4249_RS08630 0.82 +0.6
1,734,433 + A4249_RS08630 0.82 -0.0
1,734,434 - A4249_RS08630 0.82 +2.6
1,734,434 - A4249_RS08630 0.82 -0.0
1,734,434 - A4249_RS08630 0.82 -1.6
1,734,593 + -1.6
1,734,593 + +1.1
1,734,593 + +1.4
1,734,594 - -2.2
1,734,594 - +1.2
1,734,594 - +0.6
1,734,594 - +0.6
1,734,594 - -0.2
1,734,594 - -0.0
1,734,594 - +0.2
1,734,594 - +1.0
1,734,594 - -0.2
1,734,594 - -0.0
1,734,597 + +2.6
1,734,597 + +0.3
1,734,597 + +1.1
1,734,597 + -0.3
1,734,597 + +0.5
1,734,597 + +0.8
1,734,598 - -4.4
1,734,598 - -0.5
1,734,704 + +1.6
1,734,705 - -0.8
1,734,705 - +0.8
1,734,705 - +1.0
1,734,705 - +2.2
1,734,718 + +1.6
1,734,718 + +0.6
1,734,719 - -0.7
1,734,719 - -0.0
1,734,719 - -3.0
1,734,719 - +0.3
1,734,719 - -0.4
1,734,781 + +0.3
1,734,781 + +1.1
1,734,781 + -1.4
1,734,781 + -0.5
1,734,781 + +0.6
1,734,782 - -2.6
1,734,782 - -0.8
1,734,782 - +1.0
1,734,782 - -0.2
1,734,782 - -1.0
1,734,817 + A4249_RS08635 0.12 -0.6
1,734,817 + A4249_RS08635 0.12 +1.6
1,734,817 + A4249_RS08635 0.12 -0.9
1,734,817 + A4249_RS08635 0.12 -0.0
1,734,817 + A4249_RS08635 0.12 +0.3
1,734,817 + A4249_RS08635 0.12 -1.4
1,734,817 + A4249_RS08635 0.12 +0.3
1,734,818 - A4249_RS08635 0.12 -1.8
1,734,818 - A4249_RS08635 0.12 +0.8
1,734,818 - A4249_RS08635 0.12 +0.5
1,734,818 - A4249_RS08635 0.12 -1.2
1,734,818 - A4249_RS08635 0.12 +2.1
1,734,818 - A4249_RS08635 0.12 +2.0
1,734,818 - A4249_RS08635 0.12 -3.4
1,734,846 + A4249_RS08635 0.13 -0.0
1,734,846 + A4249_RS08635 0.13 -1.6
1,734,847 - A4249_RS08635 0.13 -0.8
1,734,847 - A4249_RS08635 0.13 +1.3
1,734,847 - A4249_RS08635 0.13 -0.0
1,734,847 - A4249_RS08635 0.13 +0.1
1,734,979 + A4249_RS08635 0.21 -1.0
1,734,979 + A4249_RS08635 0.21 +2.0
1,734,979 + A4249_RS08635 0.21 +0.6
1,734,980 - A4249_RS08635 0.21 +1.0
1,734,980 - A4249_RS08635 0.21 +1.0
1,734,980 - A4249_RS08635 0.21 -0.9
1,735,003 + A4249_RS08635 0.22 -1.6
1,735,003 + A4249_RS08635 0.22 +0.4
1,735,003 + A4249_RS08635 0.22 -0.8
1,735,003 + A4249_RS08635 0.22 -0.4
1,735,003 + A4249_RS08635 0.22 -0.1
1,735,003 + A4249_RS08635 0.22 -0.3
1,735,004 - A4249_RS08635 0.22 -1.6
1,735,004 - A4249_RS08635 0.22 -0.8
1,735,004 - A4249_RS08635 0.22 +0.3
1,735,004 - A4249_RS08635 0.22 +1.3
1,735,004 - A4249_RS08635 0.22 +1.4
1,735,004 - A4249_RS08635 0.22 -1.6
1,735,004 - A4249_RS08635 0.22 +0.1
1,735,186 + A4249_RS08635 0.33 +0.2
1,735,186 + A4249_RS08635 0.33 +0.6
1,735,186 + A4249_RS08635 0.33 +1.6
1,735,186 + A4249_RS08635 0.33 -0.2
1,735,186 + A4249_RS08635 0.33 +1.0
1,735,186 + A4249_RS08635 0.33 +0.3
1,735,186 + A4249_RS08635 0.33 +1.8
1,735,186 + A4249_RS08635 0.33 -0.6
1,735,187 - A4249_RS08635 0.33 +1.1
1,735,187 - A4249_RS08635 0.33 +0.1
1,735,187 - A4249_RS08635 0.33 -2.4
1,735,187 - A4249_RS08635 0.33 -1.6
1,735,187 - A4249_RS08635 0.33 -0.0
1,735,243 + A4249_RS08635 0.36 +0.2
1,735,438 + A4249_RS08635 0.47 -1.4
1,735,439 - A4249_RS08635 0.47 +1.6
1,735,439 - A4249_RS08635 0.47 -0.0
1,735,439 - A4249_RS08635 0.47 +3.0
1,735,439 - A4249_RS08635 0.47 -1.6
1,735,440 + A4249_RS08635 0.47 -0.2
1,735,440 + A4249_RS08635 0.47 +1.0
1,735,440 + A4249_RS08635 0.47 -0.1
1,735,440 + A4249_RS08635 0.47 +1.8
1,735,441 - A4249_RS08635 0.47 -0.0
1,735,441 - A4249_RS08635 0.47 +0.6
1,735,441 - A4249_RS08635 0.47 -0.7
1,735,441 - A4249_RS08635 0.47 -0.6
1,735,495 + A4249_RS08635 0.50 -1.1
1,735,495 + A4249_RS08635 0.50 +1.6
1,735,495 + A4249_RS08635 0.50 +0.3
1,735,495 + A4249_RS08635 0.50 -0.0
1,735,495 + A4249_RS08635 0.50 -0.4
1,735,496 - A4249_RS08635 0.50 -3.2
1,735,496 - A4249_RS08635 0.50 -1.0
1,735,525 + A4249_RS08635 0.52 +0.6
1,735,526 - A4249_RS08635 0.52 -2.4
1,735,526 - A4249_RS08635 0.52 -0.1
1,735,526 - A4249_RS08635 0.52 +1.0
1,735,526 - A4249_RS08635 0.52 -2.8

Or see this region's nucleotide sequence