Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08045

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08035 and A4249_RS08040 are separated by 57 nucleotidesA4249_RS08040 and A4249_RS08045 are separated by 81 nucleotidesA4249_RS08045 and A4249_RS08050 are separated by 250 nucleotides A4249_RS08035: A4249_RS08035 - TSCPD domain-containing protein, at 1,606,055 to 1,608,592 _RS08035 A4249_RS08040: A4249_RS08040 - pentapeptide repeat-containing protein, at 1,608,650 to 1,609,141 _RS08040 A4249_RS08045: A4249_RS08045 - pentapeptide repeat-containing protein, at 1,609,223 to 1,610,110 _RS08045 A4249_RS08050: A4249_RS08050 - elongation factor Tu, at 1,610,361 to 1,611,551 _RS08050 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.245 kb on + strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.246 kb on - strand, within A4249_RS08035at 1608.272 kb on + strand, within A4249_RS08035at 1608.272 kb on + strand, within A4249_RS08035at 1608.273 kb on - strand, within A4249_RS08035at 1608.273 kb on - strand, within A4249_RS08035at 1608.355 kb on + strandat 1608.591 kb on - strandat 1608.591 kb on - strandat 1608.609 kb on + strandat 1608.610 kb on - strandat 1608.912 kb on - strand, within A4249_RS08040at 1608.912 kb on - strand, within A4249_RS08040at 1608.980 kb on + strand, within A4249_RS08040at 1608.980 kb on + strand, within A4249_RS08040at 1608.981 kb on - strand, within A4249_RS08040at 1609.188 kb on + strandat 1610.035 kb on + strandat 1610.036 kb on - strandat 1610.036 kb on - strandat 1610.108 kb on + strandat 1610.108 kb on + strandat 1610.109 kb on - strandat 1610.109 kb on - strandat 1610.109 kb on - strandat 1610.109 kb on - strandat 1610.204 kb on + strandat 1610.222 kb on + strandat 1610.222 kb on + strandat 1610.222 kb on + strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.223 kb on - strandat 1610.297 kb on + strandat 1610.297 kb on + strandat 1610.298 kb on - strandat 1610.298 kb on - strandat 1610.298 kb on - strandat 1610.302 kb on + strandat 1610.302 kb on + strandat 1610.302 kb on + strandat 1610.302 kb on + strandat 1610.303 kb on - strandat 1610.303 kb on - strandat 1610.303 kb on - strandat 1610.303 kb on - strandat 1610.319 kb on + strandat 1610.319 kb on + strandat 1610.319 kb on + strandat 1610.319 kb on + strandat 1610.320 kb on - strandat 1610.320 kb on - strandat 1610.320 kb on - strandat 1610.363 kb on - strandat 1610.950 kb on + strand, within A4249_RS08050

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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1,608,245 + A4249_RS08035 0.86 -0.4
1,608,245 + A4249_RS08035 0.86 +0.6
1,608,245 + A4249_RS08035 0.86 -0.2
1,608,245 + A4249_RS08035 0.86 +0.8
1,608,245 + A4249_RS08035 0.86 -0.7
1,608,245 + A4249_RS08035 0.86 +1.0
1,608,245 + A4249_RS08035 0.86 +0.8
1,608,245 + A4249_RS08035 0.86 -0.1
1,608,246 - A4249_RS08035 0.86 -0.0
1,608,246 - A4249_RS08035 0.86 +0.1
1,608,246 - A4249_RS08035 0.86 +1.0
1,608,246 - A4249_RS08035 0.86 +1.0
1,608,246 - A4249_RS08035 0.86 -0.9
1,608,246 - A4249_RS08035 0.86 -1.0
1,608,246 - A4249_RS08035 0.86 -0.0
1,608,272 + A4249_RS08035 0.87 -0.7
1,608,272 + A4249_RS08035 0.87 -0.0
1,608,273 - A4249_RS08035 0.87 -0.4
1,608,273 - A4249_RS08035 0.87 -0.5
1,608,355 + -0.6
1,608,591 - -1.2
1,608,591 - +1.0
1,608,609 + +0.4
1,608,610 - +0.3
1,608,912 - A4249_RS08040 0.53 +1.1
1,608,912 - A4249_RS08040 0.53 -0.6
1,608,980 + A4249_RS08040 0.67 +0.5
1,608,980 + A4249_RS08040 0.67 +0.5
1,608,981 - A4249_RS08040 0.67 -0.3
1,609,188 + -0.0
1,610,035 + +1.8
1,610,036 - -2.4
1,610,036 - -1.0
1,610,108 + -2.4
1,610,108 + +1.7
1,610,109 - -2.2
1,610,109 - +1.3
1,610,109 - -0.4
1,610,109 - -0.8
1,610,204 + -0.7
1,610,222 + -1.1
1,610,222 + -0.0
1,610,222 + -0.0
1,610,223 - -1.8
1,610,223 - +2.3
1,610,223 - -0.2
1,610,223 - -0.2
1,610,223 - -0.9
1,610,297 + -0.9
1,610,297 + +1.2
1,610,298 - -0.4
1,610,298 - -0.0
1,610,298 - +0.1
1,610,302 + -3.4
1,610,302 + -0.3
1,610,302 + -1.2
1,610,302 + +2.0
1,610,303 - +0.2
1,610,303 - +0.6
1,610,303 - -0.4
1,610,303 - +0.4
1,610,319 + +2.0
1,610,319 + -0.0
1,610,319 + +0.2
1,610,319 + -0.3
1,610,320 - +0.1
1,610,320 - +1.1
1,610,320 - +1.6
1,610,363 - +2.3
1,610,950 + A4249_RS08050 0.49 -0.0

Or see this region's nucleotide sequence