Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07910

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07905 and A4249_RS07910 are separated by 29 nucleotidesA4249_RS07910 and A4249_RS07915 are separated by 2 nucleotidesA4249_RS07915 and A4249_RS07920 are separated by 118 nucleotides A4249_RS07905: A4249_RS07905 - energy-dependent translational throttle protein EttA, at 1,580,544 to 1,582,211 _RS07905 A4249_RS07910: A4249_RS07910 - 2-hydroxyacid dehydrogenase, at 1,582,241 to 1,583,167 _RS07910 A4249_RS07915: A4249_RS07915 - EF-hand domain-containing protein, at 1,583,170 to 1,583,574 _RS07915 A4249_RS07920: A4249_RS07920 - metalloregulator ArsR/SmtB family transcription factor, at 1,583,693 to 1,584,652 _RS07920 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -3 -2 -1 0 1at 1582.313 kb on + strandat 1582.322 kb on + strandat 1582.322 kb on + strandat 1582.323 kb on - strandat 1582.460 kb on + strand, within A4249_RS07910at 1582.460 kb on + strand, within A4249_RS07910at 1582.461 kb on - strand, within A4249_RS07910at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.274 kb on + strand, within A4249_RS07915at 1583.275 kb on - strand, within A4249_RS07915at 1583.275 kb on - strand, within A4249_RS07915at 1583.353 kb on + strand, within A4249_RS07915at 1583.353 kb on + strand, within A4249_RS07915at 1583.353 kb on + strand, within A4249_RS07915at 1583.354 kb on - strand, within A4249_RS07915at 1583.454 kb on + strand, within A4249_RS07915at 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.568 kb on + strandat 1583.569 kb on - strandat 1583.604 kb on + strandat 1583.604 kb on + strandat 1583.604 kb on + strandat 1583.605 kb on - strandat 1583.670 kb on + strandat 1583.671 kb on - strandat 1583.671 kb on - strandat 1583.676 kb on + strandat 1583.676 kb on + strandat 1583.683 kb on - strandat 1583.684 kb on + strandat 1583.684 kb on + strandat 1583.685 kb on - strandat 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.903 kb on + strand, within A4249_RS07920at 1583.904 kb on - strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.906 kb on + strand, within A4249_RS07920at 1583.907 kb on - strand, within A4249_RS07920at 1583.907 kb on - strand, within A4249_RS07920at 1583.907 kb on - strand, within A4249_RS07920at 1583.965 kb on - strand, within A4249_RS07920at 1584.041 kb on + strand, within A4249_RS07920at 1584.042 kb on - strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.086 kb on + strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920at 1584.087 kb on - strand, within A4249_RS07920

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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1,582,313 + -0.5
1,582,322 + +0.6
1,582,322 + -0.6
1,582,323 - +0.3
1,582,460 + A4249_RS07910 0.24 +0.1
1,582,460 + A4249_RS07910 0.24 -1.0
1,582,461 - A4249_RS07910 0.24 -0.7
1,583,274 + A4249_RS07915 0.26 -1.0
1,583,274 + A4249_RS07915 0.26 -1.0
1,583,274 + A4249_RS07915 0.26 -0.0
1,583,274 + A4249_RS07915 0.26 -0.2
1,583,274 + A4249_RS07915 0.26 +0.5
1,583,274 + A4249_RS07915 0.26 +0.1
1,583,274 + A4249_RS07915 0.26 -0.2
1,583,274 + A4249_RS07915 0.26 -2.0
1,583,275 - A4249_RS07915 0.26 +1.6
1,583,275 - A4249_RS07915 0.26 -2.5
1,583,353 + A4249_RS07915 0.45 +0.3
1,583,353 + A4249_RS07915 0.45 -0.1
1,583,353 + A4249_RS07915 0.45 -0.6
1,583,354 - A4249_RS07915 0.45 +1.0
1,583,454 + A4249_RS07915 0.70 -0.4
1,583,568 + +1.0
1,583,568 + -0.2
1,583,568 + +1.0
1,583,568 + -2.0
1,583,568 + -0.5
1,583,569 - +0.2
1,583,604 + -1.0
1,583,604 + -2.3
1,583,604 + -3.3
1,583,605 - -0.2
1,583,670 + +1.4
1,583,671 - -0.2
1,583,671 - -0.3
1,583,676 + -0.5
1,583,676 + -0.3
1,583,683 - +0.6
1,583,684 + +0.2
1,583,684 + -0.0
1,583,685 - +0.9
1,583,903 + A4249_RS07920 0.22 -2.6
1,583,903 + A4249_RS07920 0.22 -2.6
1,583,903 + A4249_RS07920 0.22 -2.8
1,583,903 + A4249_RS07920 0.22 -3.0
1,583,903 + A4249_RS07920 0.22 -2.0
1,583,904 - A4249_RS07920 0.22 -2.8
1,583,906 + A4249_RS07920 0.22 -1.0
1,583,906 + A4249_RS07920 0.22 -0.0
1,583,906 + A4249_RS07920 0.22 -1.8
1,583,906 + A4249_RS07920 0.22 -2.6
1,583,907 - A4249_RS07920 0.22 -1.0
1,583,907 - A4249_RS07920 0.22 -2.0
1,583,907 - A4249_RS07920 0.22 -3.4
1,583,965 - A4249_RS07920 0.28 -1.0
1,584,041 + A4249_RS07920 0.36 -0.0
1,584,042 - A4249_RS07920 0.36 -1.8
1,584,086 + A4249_RS07920 0.41 -3.5
1,584,086 + A4249_RS07920 0.41 -1.0
1,584,086 + A4249_RS07920 0.41 -1.0
1,584,086 + A4249_RS07920 0.41 -1.0
1,584,087 - A4249_RS07920 0.41 -2.4
1,584,087 - A4249_RS07920 0.41 -2.0
1,584,087 - A4249_RS07920 0.41 -0.0
1,584,087 - A4249_RS07920 0.41 -1.6

Or see this region's nucleotide sequence