Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07260

Experiment: Tween 20 (C), 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS07250 and A4249_RS07255 are separated by 122 nucleotidesA4249_RS07255 and A4249_RS07260 are separated by 72 nucleotidesA4249_RS07260 and A4249_RS07265 are separated by 108 nucleotidesA4249_RS07265 and A4249_RS17075 are separated by 150 nucleotides A4249_RS07250: A4249_RS07250 - NAD-dependent DNA ligase LigA, at 1,451,192 to 1,453,525 _RS07250 A4249_RS07255: A4249_RS07255 - DUF2147 domain-containing protein, at 1,453,648 to 1,454,070 _RS07255 A4249_RS07260: A4249_RS07260 - aldo/keto reductase, at 1,454,143 to 1,455,129 _RS07260 A4249_RS07265: A4249_RS07265 - tRNA-His, at 1,455,238 to 1,455,314 _RS07265 A4249_RS17075: A4249_RS17075 - energy transducer TonB, at 1,455,465 to 1,456,184 _RS17075 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1453.534 kb on + strandat 1453.534 kb on + strandat 1453.534 kb on + strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.535 kb on - strandat 1453.647 kb on + strandat 1453.647 kb on + strandat 1453.648 kb on - strandat 1453.648 kb on - strandat 1453.648 kb on - strandat 1453.746 kb on + strand, within A4249_RS07255at 1453.746 kb on + strand, within A4249_RS07255at 1453.747 kb on - strand, within A4249_RS07255at 1453.747 kb on - strand, within A4249_RS07255at 1453.794 kb on + strand, within A4249_RS07255at 1453.932 kb on + strand, within A4249_RS07255at 1453.932 kb on + strand, within A4249_RS07255at 1453.933 kb on - strand, within A4249_RS07255at 1453.933 kb on - strand, within A4249_RS07255at 1453.941 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.945 kb on + strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.946 kb on - strand, within A4249_RS07255at 1453.969 kb on + strand, within A4249_RS07255at 1453.969 kb on + strand, within A4249_RS07255at 1454.012 kb on + strand, within A4249_RS07255at 1454.036 kb on + strandat 1454.037 kb on - strandat 1454.068 kb on + strandat 1454.088 kb on + strandat 1454.088 kb on + strandat 1454.088 kb on + strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.089 kb on - strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.139 kb on + strandat 1454.140 kb on - strandat 1454.177 kb on + strandat 1454.178 kb on - strandat 1454.363 kb on - strand, within A4249_RS07260at 1454.363 kb on - strand, within A4249_RS07260at 1454.371 kb on - strand, within A4249_RS07260at 1454.526 kb on - strand, within A4249_RS07260at 1454.600 kb on + strand, within A4249_RS07260at 1454.600 kb on + strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.601 kb on - strand, within A4249_RS07260at 1454.765 kb on + strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.766 kb on - strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.768 kb on + strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.769 kb on - strand, within A4249_RS07260at 1454.815 kb on - strand, within A4249_RS07260at 1454.851 kb on - strand, within A4249_RS07260at 1454.851 kb on - strand, within A4249_RS07260at 1454.873 kb on + strand, within A4249_RS07260at 1454.873 kb on + strand, within A4249_RS07260at 1454.874 kb on - strand, within A4249_RS07260at 1454.874 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.953 kb on - strand, within A4249_RS07260at 1454.964 kb on - strand, within A4249_RS07260at 1454.964 kb on - strand, within A4249_RS07260at 1455.051 kb on - strandat 1455.051 kb on - strandat 1455.051 kb on - strandat 1455.170 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.172 kb on - strandat 1455.376 kb on + strandat 1455.376 kb on + strandat 1455.376 kb on + strandat 1455.377 kb on - strandat 1455.377 kb on - strandat 1455.800 kb on + strand, within A4249_RS17075at 1455.820 kb on + strand, within A4249_RS17075at 1455.820 kb on + strand, within A4249_RS17075at 1455.821 kb on - strand, within A4249_RS17075at 1456.015 kb on + strand, within A4249_RS17075at 1456.016 kb on - strand, within A4249_RS17075at 1456.115 kb on - strandat 1456.115 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
remove
1,453,534 + -2.8
1,453,534 + -0.7
1,453,534 + -0.0
1,453,535 - -0.3
1,453,535 - -0.0
1,453,535 - +0.1
1,453,535 - -0.8
1,453,535 - +0.4
1,453,535 - +0.8
1,453,647 + -0.5
1,453,647 + +0.3
1,453,648 - -0.3
1,453,648 - -0.4
1,453,648 - +0.1
1,453,746 + A4249_RS07255 0.23 -0.3
1,453,746 + A4249_RS07255 0.23 -0.6
1,453,747 - A4249_RS07255 0.23 -1.0
1,453,747 - A4249_RS07255 0.23 +0.8
1,453,794 + A4249_RS07255 0.35 -1.2
1,453,932 + A4249_RS07255 0.67 -1.4
1,453,932 + A4249_RS07255 0.67 +1.0
1,453,933 - A4249_RS07255 0.67 +0.7
1,453,933 - A4249_RS07255 0.67 -2.5
1,453,941 + A4249_RS07255 0.69 -1.0
1,453,945 + A4249_RS07255 0.70 -0.0
1,453,945 + A4249_RS07255 0.70 -0.1
1,453,945 + A4249_RS07255 0.70 -0.0
1,453,946 - A4249_RS07255 0.70 +1.0
1,453,946 - A4249_RS07255 0.70 -0.6
1,453,946 - A4249_RS07255 0.70 +0.8
1,453,946 - A4249_RS07255 0.70 -0.4
1,453,946 - A4249_RS07255 0.70 +0.6
1,453,969 + A4249_RS07255 0.76 +0.1
1,453,969 + A4249_RS07255 0.76 -1.7
1,454,012 + A4249_RS07255 0.86 +0.2
1,454,036 + +0.8
1,454,037 - -0.0
1,454,068 + -0.3
1,454,088 + -0.6
1,454,088 + -0.4
1,454,088 + +0.5
1,454,089 - +2.8
1,454,089 - -1.8
1,454,089 - +0.9
1,454,089 - +1.4
1,454,089 - -0.0
1,454,089 - -0.3
1,454,089 - -0.9
1,454,089 - -0.1
1,454,089 - +2.1
1,454,089 - -1.2
1,454,139 + -0.4
1,454,139 + +0.5
1,454,139 + -0.0
1,454,139 + -1.2
1,454,140 - -0.1
1,454,177 + +0.4
1,454,178 - -0.3
1,454,363 - A4249_RS07260 0.22 +0.1
1,454,363 - A4249_RS07260 0.22 +1.2
1,454,371 - A4249_RS07260 0.23 -2.0
1,454,526 - A4249_RS07260 0.39 -1.2
1,454,600 + A4249_RS07260 0.46 -0.2
1,454,600 + A4249_RS07260 0.46 +1.8
1,454,601 - A4249_RS07260 0.46 -0.4
1,454,601 - A4249_RS07260 0.46 +0.6
1,454,601 - A4249_RS07260 0.46 +0.1
1,454,765 + A4249_RS07260 0.63 -1.0
1,454,766 - A4249_RS07260 0.63 +1.3
1,454,766 - A4249_RS07260 0.63 +1.2
1,454,766 - A4249_RS07260 0.63 -0.1
1,454,766 - A4249_RS07260 0.63 +1.6
1,454,766 - A4249_RS07260 0.63 -0.2
1,454,766 - A4249_RS07260 0.63 -0.3
1,454,766 - A4249_RS07260 0.63 +0.9
1,454,766 - A4249_RS07260 0.63 -0.7
1,454,768 + A4249_RS07260 0.63 +0.5
1,454,768 + A4249_RS07260 0.63 -0.0
1,454,768 + A4249_RS07260 0.63 +0.2
1,454,768 + A4249_RS07260 0.63 -0.0
1,454,768 + A4249_RS07260 0.63 -0.2
1,454,769 - A4249_RS07260 0.63 +1.6
1,454,769 - A4249_RS07260 0.63 +0.5
1,454,769 - A4249_RS07260 0.63 -0.2
1,454,769 - A4249_RS07260 0.63 -0.8
1,454,815 - A4249_RS07260 0.68 +2.6
1,454,851 - A4249_RS07260 0.72 -0.8
1,454,851 - A4249_RS07260 0.72 +0.5
1,454,873 + A4249_RS07260 0.74 -0.6
1,454,873 + A4249_RS07260 0.74 +1.0
1,454,874 - A4249_RS07260 0.74 +0.2
1,454,874 - A4249_RS07260 0.74 +0.6
1,454,953 - A4249_RS07260 0.82 -0.0
1,454,953 - A4249_RS07260 0.82 -0.0
1,454,953 - A4249_RS07260 0.82 +0.5
1,454,953 - A4249_RS07260 0.82 +0.1
1,454,964 - A4249_RS07260 0.83 +0.6
1,454,964 - A4249_RS07260 0.83 -0.0
1,455,051 - +0.3
1,455,051 - -0.4
1,455,051 - -0.0
1,455,170 - +0.1
1,455,172 - +0.2
1,455,172 - +0.5
1,455,172 - +0.1
1,455,172 - -0.4
1,455,172 - +0.7
1,455,376 + +1.0
1,455,376 + -0.5
1,455,376 + +0.9
1,455,377 - +0.5
1,455,377 - +0.3
1,455,800 + A4249_RS17075 0.47 -2.2
1,455,820 + A4249_RS17075 0.49 -0.7
1,455,820 + A4249_RS17075 0.49 -0.0
1,455,821 - A4249_RS17075 0.49 -2.3
1,456,015 + A4249_RS17075 0.76 +1.0
1,456,016 - A4249_RS17075 0.77 -0.0
1,456,115 - -0.8
1,456,115 - +0.2

Or see this region's nucleotide sequence