Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04735 and A4249_RS04740 are separated by 105 nucleotides A4249_RS04740 and A4249_RS04745 are separated by 49 nucleotides A4249_RS04745 and A4249_RS04750 overlap by 4 nucleotides A4249_RS04750 and A4249_RS04755 overlap by 1 nucleotides
A4249_RS04735: A4249_RS04735 - tRNA-Ser, at 984,887 to 984,976
_RS04735
A4249_RS04740: A4249_RS04740 - septal ring lytic transglycosylase RlpA family protein, at 985,082 to 985,921
_RS04740
A4249_RS04745: A4249_RS04745 - dTMP kinase, at 985,971 to 986,603
_RS04745
A4249_RS04750: A4249_RS04750 - DNA polymerase III subunit delta', at 986,600 to 987,589
_RS04750
A4249_RS04755: A4249_RS04755 - TatD family hydrolase, at 987,589 to 988,371
_RS04755
Position (kb) 985
986
987 Strain fitness (log2 ratio) -1
0
1
2 at 985.005 kb on - strand at 985.247 kb on + strand, within A4249_RS04740 at 985.248 kb on - strand, within A4249_RS04740 at 985.268 kb on + strand, within A4249_RS04740 at 985.268 kb on + strand, within A4249_RS04740 at 985.268 kb on + strand, within A4249_RS04740 at 985.269 kb on - strand, within A4249_RS04740 at 985.269 kb on - strand, within A4249_RS04740 at 985.292 kb on + strand, within A4249_RS04740 at 985.293 kb on - strand, within A4249_RS04740 at 985.293 kb on - strand, within A4249_RS04740 at 985.293 kb on - strand, within A4249_RS04740 at 985.293 kb on - strand, within A4249_RS04740 at 985.319 kb on + strand, within A4249_RS04740 at 985.608 kb on + strand, within A4249_RS04740 at 985.609 kb on - strand, within A4249_RS04740 at 985.707 kb on + strand, within A4249_RS04740 at 985.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 985,005 - +2.3 985,247 + A4249_RS04740 0.20 +0.3 985,248 - A4249_RS04740 0.20 +0.4 985,268 + A4249_RS04740 0.22 -0.3 985,268 + A4249_RS04740 0.22 +0.2 985,268 + A4249_RS04740 0.22 +0.8 985,269 - A4249_RS04740 0.22 -0.1 985,269 - A4249_RS04740 0.22 -0.2 985,292 + A4249_RS04740 0.25 +0.2 985,293 - A4249_RS04740 0.25 -0.4 985,293 - A4249_RS04740 0.25 +0.2 985,293 - A4249_RS04740 0.25 -0.0 985,293 - A4249_RS04740 0.25 -0.0 985,319 + A4249_RS04740 0.28 -0.2 985,608 + A4249_RS04740 0.63 -0.7 985,609 - A4249_RS04740 0.63 -0.1 985,707 + A4249_RS04740 0.74 +0.0 985,890 - -0.5
Or see this region's nucleotide sequence