Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04400

Experiment: Tween 20 (C), 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS04395 and A4249_RS04400 are separated by 109 nucleotidesA4249_RS04400 and A4249_RS04405 overlap by 34 nucleotidesA4249_RS04405 and A4249_RS04410 overlap by 2 nucleotides A4249_RS04395: A4249_RS04395 - polyprenyl synthetase family protein, at 910,125 to 911,021 _RS04395 A4249_RS04400: A4249_RS04400 - type 2 isopentenyl-diphosphate Delta-isomerase, at 911,131 to 912,174 _RS04400 A4249_RS04405: A4249_RS04405 - sterol desaturase family protein, at 912,141 to 912,626 _RS04405 A4249_RS04410: A4249_RS04410 - sterol desaturase family protein, at 912,625 to 913,434 _RS04410 Position (kb) 911 912 913Strain fitness (log2 ratio) -2 -1 0 1 2at 910.165 kb on + strandat 910.165 kb on + strandat 910.165 kb on + strandat 910.165 kb on + strandat 910.165 kb on + strandat 910.165 kb on + strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.166 kb on - strandat 910.449 kb on + strand, within A4249_RS04395at 910.450 kb on - strand, within A4249_RS04395at 910.450 kb on - strand, within A4249_RS04395at 910.450 kb on - strand, within A4249_RS04395at 910.789 kb on + strand, within A4249_RS04395at 910.789 kb on + strand, within A4249_RS04395at 910.790 kb on - strand, within A4249_RS04395at 910.790 kb on - strand, within A4249_RS04395at 910.790 kb on - strand, within A4249_RS04395at 910.790 kb on - strand, within A4249_RS04395at 910.895 kb on + strand, within A4249_RS04395at 910.895 kb on + strand, within A4249_RS04395at 910.895 kb on + strand, within A4249_RS04395at 911.021 kb on + strandat 911.021 kb on + strandat 911.022 kb on - strandat 911.022 kb on - strandat 911.034 kb on + strandat 911.073 kb on + strandat 911.073 kb on + strandat 911.073 kb on + strandat 911.073 kb on + strandat 911.074 kb on - strandat 911.084 kb on - strandat 911.084 kb on - strandat 911.262 kb on + strand, within A4249_RS04400at 911.262 kb on + strand, within A4249_RS04400at 911.262 kb on + strand, within A4249_RS04400at 911.263 kb on - strand, within A4249_RS04400at 911.263 kb on - strand, within A4249_RS04400at 911.543 kb on - strand, within A4249_RS04400at 911.543 kb on - strand, within A4249_RS04400at 911.906 kb on + strand, within A4249_RS04400at 911.906 kb on + strand, within A4249_RS04400at 911.907 kb on - strand, within A4249_RS04400at 912.358 kb on + strand, within A4249_RS04405at 912.358 kb on + strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.359 kb on - strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.370 kb on + strand, within A4249_RS04405at 912.371 kb on - strand, within A4249_RS04405at 912.371 kb on - strand, within A4249_RS04405at 912.371 kb on - strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.547 kb on + strand, within A4249_RS04405at 912.548 kb on - strand, within A4249_RS04405at 912.548 kb on - strand, within A4249_RS04405at 912.548 kb on - strand, within A4249_RS04405at 912.636 kb on + strandat 912.637 kb on - strandat 912.637 kb on - strandat 912.637 kb on - strandat 912.645 kb on + strandat 912.645 kb on + strandat 912.646 kb on - strandat 912.646 kb on - strandat 912.757 kb on + strand, within A4249_RS04410at 912.758 kb on - strand, within A4249_RS04410at 912.892 kb on + strand, within A4249_RS04410at 912.892 kb on + strand, within A4249_RS04410at 912.892 kb on + strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.893 kb on - strand, within A4249_RS04410at 912.949 kb on + strand, within A4249_RS04410at 912.949 kb on + strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.950 kb on - strand, within A4249_RS04410at 912.958 kb on - strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.003 kb on + strand, within A4249_RS04410at 913.004 kb on - strand, within A4249_RS04410at 913.004 kb on - strand, within A4249_RS04410at 913.004 kb on - strand, within A4249_RS04410at 913.010 kb on + strand, within A4249_RS04410at 913.010 kb on + strand, within A4249_RS04410at 913.011 kb on - strand, within A4249_RS04410at 913.011 kb on - strand, within A4249_RS04410at 913.011 kb on - strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.027 kb on + strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.028 kb on - strand, within A4249_RS04410at 913.030 kb on + strand, within A4249_RS04410at 913.031 kb on - strand, within A4249_RS04410at 913.031 kb on - strand, within A4249_RS04410at 913.031 kb on - strand, within A4249_RS04410at 913.054 kb on + strand, within A4249_RS04410at 913.055 kb on - strand, within A4249_RS04410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
remove
910,165 + -0.7
910,165 + +0.3
910,165 + +0.2
910,165 + -2.1
910,165 + +0.2
910,165 + -1.3
910,166 - +0.5
910,166 - +0.2
910,166 - +0.3
910,166 - +0.6
910,166 - +0.9
910,166 - +1.5
910,166 - +0.2
910,166 - -0.1
910,166 - -0.7
910,449 + A4249_RS04395 0.36 +0.6
910,450 - A4249_RS04395 0.36 +0.9
910,450 - A4249_RS04395 0.36 +1.3
910,450 - A4249_RS04395 0.36 +0.8
910,789 + A4249_RS04395 0.74 -1.1
910,789 + A4249_RS04395 0.74 -0.3
910,790 - A4249_RS04395 0.74 -1.1
910,790 - A4249_RS04395 0.74 -0.5
910,790 - A4249_RS04395 0.74 +0.7
910,790 - A4249_RS04395 0.74 -1.1
910,895 + A4249_RS04395 0.86 +1.7
910,895 + A4249_RS04395 0.86 +2.0
910,895 + A4249_RS04395 0.86 -1.3
911,021 + -0.2
911,021 + +0.4
911,022 - +0.5
911,022 - +0.9
911,034 + +0.4
911,073 + +1.6
911,073 + -0.4
911,073 + +0.4
911,073 + -0.5
911,074 - -2.2
911,084 - +0.6
911,084 - +1.7
911,262 + A4249_RS04400 0.13 +0.3
911,262 + A4249_RS04400 0.13 -0.3
911,262 + A4249_RS04400 0.13 +0.2
911,263 - A4249_RS04400 0.13 +0.0
911,263 - A4249_RS04400 0.13 -0.3
911,543 - A4249_RS04400 0.39 +0.3
911,543 - A4249_RS04400 0.39 +0.5
911,906 + A4249_RS04400 0.74 -0.3
911,906 + A4249_RS04400 0.74 +0.2
911,907 - A4249_RS04400 0.74 -1.7
912,358 + A4249_RS04405 0.45 -2.2
912,358 + A4249_RS04405 0.45 +2.5
912,359 - A4249_RS04405 0.45 -0.1
912,359 - A4249_RS04405 0.45 -0.1
912,359 - A4249_RS04405 0.45 -0.1
912,359 - A4249_RS04405 0.45 +0.4
912,359 - A4249_RS04405 0.45 +1.5
912,370 + A4249_RS04405 0.47 -1.0
912,370 + A4249_RS04405 0.47 -0.9
912,370 + A4249_RS04405 0.47 -1.0
912,370 + A4249_RS04405 0.47 +0.5
912,371 - A4249_RS04405 0.47 +0.6
912,371 - A4249_RS04405 0.47 +0.6
912,371 - A4249_RS04405 0.47 -0.4
912,547 + A4249_RS04405 0.84 +0.1
912,547 + A4249_RS04405 0.84 -0.5
912,547 + A4249_RS04405 0.84 +1.0
912,547 + A4249_RS04405 0.84 +0.9
912,547 + A4249_RS04405 0.84 +0.7
912,547 + A4249_RS04405 0.84 +0.4
912,547 + A4249_RS04405 0.84 -0.7
912,547 + A4249_RS04405 0.84 -0.4
912,547 + A4249_RS04405 0.84 -1.1
912,547 + A4249_RS04405 0.84 -0.7
912,547 + A4249_RS04405 0.84 +0.9
912,547 + A4249_RS04405 0.84 +1.5
912,548 - A4249_RS04405 0.84 -0.1
912,548 - A4249_RS04405 0.84 -0.7
912,548 - A4249_RS04405 0.84 -1.7
912,636 + -1.6
912,637 - +0.4
912,637 - -0.7
912,637 - -2.2
912,645 + -0.4
912,645 + +0.2
912,646 - +0.4
912,646 - -0.2
912,757 + A4249_RS04410 0.16 -1.1
912,758 - A4249_RS04410 0.16 +1.3
912,892 + A4249_RS04410 0.33 +0.5
912,892 + A4249_RS04410 0.33 -1.1
912,892 + A4249_RS04410 0.33 +1.9
912,893 - A4249_RS04410 0.33 -0.2
912,893 - A4249_RS04410 0.33 +0.1
912,893 - A4249_RS04410 0.33 -0.9
912,893 - A4249_RS04410 0.33 -0.1
912,949 + A4249_RS04410 0.40 +0.4
912,949 + A4249_RS04410 0.40 +0.0
912,950 - A4249_RS04410 0.40 +1.5
912,950 - A4249_RS04410 0.40 -0.1
912,950 - A4249_RS04410 0.40 -0.7
912,950 - A4249_RS04410 0.40 +0.5
912,950 - A4249_RS04410 0.40 +1.1
912,950 - A4249_RS04410 0.40 +0.0
912,958 - A4249_RS04410 0.41 -1.1
913,003 + A4249_RS04410 0.47 -0.1
913,003 + A4249_RS04410 0.47 -0.1
913,003 + A4249_RS04410 0.47 -0.1
913,003 + A4249_RS04410 0.47 -0.1
913,003 + A4249_RS04410 0.47 -1.1
913,003 + A4249_RS04410 0.47 +0.4
913,003 + A4249_RS04410 0.47 +0.2
913,003 + A4249_RS04410 0.47 -1.7
913,004 - A4249_RS04410 0.47 -0.1
913,004 - A4249_RS04410 0.47 +0.9
913,004 - A4249_RS04410 0.47 -0.3
913,010 + A4249_RS04410 0.48 +1.9
913,010 + A4249_RS04410 0.48 +0.7
913,011 - A4249_RS04410 0.48 +0.3
913,011 - A4249_RS04410 0.48 -0.1
913,011 - A4249_RS04410 0.48 -0.8
913,027 + A4249_RS04410 0.50 +0.2
913,027 + A4249_RS04410 0.50 +0.5
913,027 + A4249_RS04410 0.50 +0.4
913,027 + A4249_RS04410 0.50 -0.7
913,027 + A4249_RS04410 0.50 -0.1
913,027 + A4249_RS04410 0.50 +0.9
913,027 + A4249_RS04410 0.50 +1.3
913,027 + A4249_RS04410 0.50 +0.4
913,027 + A4249_RS04410 0.50 +0.4
913,027 + A4249_RS04410 0.50 -2.5
913,027 + A4249_RS04410 0.50 +0.4
913,027 + A4249_RS04410 0.50 +1.7
913,028 - A4249_RS04410 0.50 -0.5
913,028 - A4249_RS04410 0.50 +0.7
913,028 - A4249_RS04410 0.50 -0.9
913,028 - A4249_RS04410 0.50 +0.9
913,028 - A4249_RS04410 0.50 +1.0
913,028 - A4249_RS04410 0.50 +0.5
913,028 - A4249_RS04410 0.50 -0.1
913,028 - A4249_RS04410 0.50 -0.5
913,028 - A4249_RS04410 0.50 +0.3
913,028 - A4249_RS04410 0.50 +1.2
913,028 - A4249_RS04410 0.50 +2.2
913,028 - A4249_RS04410 0.50 -0.1
913,030 + A4249_RS04410 0.50 +1.9
913,031 - A4249_RS04410 0.50 -0.5
913,031 - A4249_RS04410 0.50 +0.2
913,031 - A4249_RS04410 0.50 -0.1
913,054 + A4249_RS04410 0.53 +1.2
913,055 - A4249_RS04410 0.53 +0.3

Or see this region's nucleotide sequence