Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03645 and A4249_RS03650 are separated by 69 nucleotides A4249_RS03650 and A4249_RS03655 are separated by 372 nucleotides
A4249_RS03645: A4249_RS03645 - TonB-dependent receptor, at 769,875 to 772,493
_RS03645
A4249_RS03650: A4249_RS03650 - hypothetical protein, at 772,563 to 773,279
_RS03650
A4249_RS03655: A4249_RS03655 - winged helix-turn-helix domain-containing protein, at 773,652 to 774,587
_RS03655
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 771.664 kb on - strand, within A4249_RS03645 at 771.664 kb on - strand, within A4249_RS03645 at 771.990 kb on + strand, within A4249_RS03645 at 771.991 kb on - strand, within A4249_RS03645 at 771.991 kb on - strand, within A4249_RS03645 at 772.095 kb on + strand, within A4249_RS03645 at 772.095 kb on + strand, within A4249_RS03645 at 772.095 kb on + strand, within A4249_RS03645 at 772.095 kb on + strand, within A4249_RS03645 at 772.095 kb on + strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.096 kb on - strand, within A4249_RS03645 at 772.107 kb on + strand, within A4249_RS03645 at 772.107 kb on + strand, within A4249_RS03645 at 772.108 kb on - strand, within A4249_RS03645 at 772.108 kb on - strand, within A4249_RS03645 at 772.141 kb on + strand, within A4249_RS03645 at 772.257 kb on + strand at 772.257 kb on + strand at 772.257 kb on + strand at 772.257 kb on + strand at 772.257 kb on + strand at 772.257 kb on + strand at 772.258 kb on - strand at 772.258 kb on - strand at 772.259 kb on + strand at 772.259 kb on + strand at 772.336 kb on - strand at 772.336 kb on - strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.537 kb on + strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.538 kb on - strand at 772.746 kb on + strand, within A4249_RS03650 at 772.746 kb on + strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.747 kb on - strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.806 kb on + strand, within A4249_RS03650 at 772.807 kb on - strand, within A4249_RS03650 at 772.935 kb on + strand, within A4249_RS03650 at 772.936 kb on - strand, within A4249_RS03650 at 772.936 kb on - strand, within A4249_RS03650 at 772.936 kb on - strand, within A4249_RS03650 at 773.020 kb on - strand, within A4249_RS03650 at 773.020 kb on - strand, within A4249_RS03650 at 773.069 kb on + strand, within A4249_RS03650 at 773.070 kb on - strand, within A4249_RS03650 at 773.070 kb on - strand, within A4249_RS03650 at 773.237 kb on + strand at 773.238 kb on - strand at 773.238 kb on - strand at 773.238 kb on - strand at 773.238 kb on - strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.305 kb on + strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.306 kb on - strand at 773.314 kb on + strand at 773.314 kb on + strand at 773.315 kb on - strand at 773.429 kb on + strand at 773.429 kb on + strand at 773.429 kb on + strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.430 kb on - strand at 773.490 kb on - strand at 773.490 kb on - strand at 773.665 kb on + strand at 773.665 kb on + strand at 773.665 kb on + strand at 773.693 kb on + strand at 773.693 kb on + strand at 773.753 kb on - strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.872 kb on + strand, within A4249_RS03655 at 773.873 kb on - strand, within A4249_RS03655 at 773.873 kb on - strand, within A4249_RS03655 at 773.873 kb on - strand, within A4249_RS03655 at 773.924 kb on + strand, within A4249_RS03655 at 773.924 kb on + strand, within A4249_RS03655 at 773.924 kb on + strand, within A4249_RS03655 at 773.925 kb on - strand, within A4249_RS03655 at 773.925 kb on - strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.228 kb on + strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655 at 774.229 kb on - strand, within A4249_RS03655
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 771,664 - A4249_RS03645 0.68 +1.5 771,664 - A4249_RS03645 0.68 -0.8 771,990 + A4249_RS03645 0.81 -3.1 771,991 - A4249_RS03645 0.81 +0.7 771,991 - A4249_RS03645 0.81 -2.1 772,095 + A4249_RS03645 0.85 -0.7 772,095 + A4249_RS03645 0.85 +1.5 772,095 + A4249_RS03645 0.85 -1.5 772,095 + A4249_RS03645 0.85 -2.1 772,095 + A4249_RS03645 0.85 -0.1 772,096 - A4249_RS03645 0.85 -2.4 772,096 - A4249_RS03645 0.85 +1.0 772,096 - A4249_RS03645 0.85 -1.3 772,096 - A4249_RS03645 0.85 -0.9 772,096 - A4249_RS03645 0.85 -3.1 772,096 - A4249_RS03645 0.85 -1.7 772,096 - A4249_RS03645 0.85 -1.2 772,107 + A4249_RS03645 0.85 +0.9 772,107 + A4249_RS03645 0.85 -0.8 772,108 - A4249_RS03645 0.85 -1.1 772,108 - A4249_RS03645 0.85 -2.7 772,141 + A4249_RS03645 0.87 -1.5 772,257 + -0.1 772,257 + -1.0 772,257 + -0.6 772,257 + +0.6 772,257 + -2.1 772,257 + +1.1 772,258 - -1.7 772,258 - -0.4 772,259 + -0.9 772,259 + -1.1 772,336 - -1.2 772,336 - +0.2 772,537 + -0.8 772,537 + -0.0 772,537 + -0.4 772,537 + +1.0 772,537 + -0.8 772,537 + -0.1 772,537 + +0.1 772,537 + +0.9 772,537 + -0.1 772,537 + -0.5 772,537 + +1.5 772,537 + +0.3 772,537 + +0.0 772,537 + -0.1 772,537 + +1.9 772,537 + -0.1 772,537 + +0.1 772,537 + +0.4 772,537 + +0.5 772,537 + -1.3 772,537 + -2.1 772,537 + +0.4 772,537 + -0.5 772,537 + +0.2 772,537 + +0.2 772,537 + +1.2 772,537 + -0.2 772,537 + -0.7 772,537 + -0.5 772,537 + -0.1 772,538 - -0.7 772,538 - -0.1 772,538 - -1.1 772,538 - -0.8 772,538 - -0.4 772,538 - -0.3 772,538 - -0.1 772,538 - +0.1 772,538 - +0.0 772,538 - -0.3 772,538 - +0.4 772,538 - +0.6 772,538 - -0.1 772,538 - -1.4 772,538 - -2.4 772,746 + A4249_RS03650 0.26 +0.8 772,746 + A4249_RS03650 0.26 +0.1 772,747 - A4249_RS03650 0.26 +0.1 772,747 - A4249_RS03650 0.26 +1.3 772,747 - A4249_RS03650 0.26 +0.2 772,747 - A4249_RS03650 0.26 -0.6 772,747 - A4249_RS03650 0.26 +1.2 772,747 - A4249_RS03650 0.26 +1.0 772,747 - A4249_RS03650 0.26 +0.8 772,747 - A4249_RS03650 0.26 +0.4 772,747 - A4249_RS03650 0.26 +0.6 772,747 - A4249_RS03650 0.26 +1.3 772,747 - A4249_RS03650 0.26 +0.3 772,806 + A4249_RS03650 0.34 -0.8 772,806 + A4249_RS03650 0.34 +0.5 772,806 + A4249_RS03650 0.34 -0.3 772,806 + A4249_RS03650 0.34 +0.3 772,806 + A4249_RS03650 0.34 +0.2 772,807 - A4249_RS03650 0.34 -0.1 772,935 + A4249_RS03650 0.52 -0.7 772,936 - A4249_RS03650 0.52 +0.3 772,936 - A4249_RS03650 0.52 -1.2 772,936 - A4249_RS03650 0.52 +0.2 773,020 - A4249_RS03650 0.64 -1.7 773,020 - A4249_RS03650 0.64 +0.3 773,069 + A4249_RS03650 0.71 +0.4 773,070 - A4249_RS03650 0.71 +1.6 773,070 - A4249_RS03650 0.71 -0.4 773,237 + -0.5 773,238 - +0.8 773,238 - -0.7 773,238 - +0.3 773,238 - -0.4 773,305 + -2.1 773,305 + -0.2 773,305 + -0.6 773,305 + -1.3 773,305 + -0.6 773,306 - +0.8 773,306 - +1.5 773,306 - +0.1 773,306 - -0.1 773,306 - +1.1 773,306 - -1.0 773,314 + +0.4 773,314 + +0.2 773,315 - +0.1 773,429 + +0.5 773,429 + +1.9 773,429 + +1.9 773,430 - +0.3 773,430 - -1.1 773,430 - -1.3 773,430 - -0.2 773,430 - -1.1 773,430 - +0.0 773,430 - -0.8 773,430 - -0.4 773,430 - -0.1 773,490 - +0.1 773,490 - +0.1 773,665 + +0.4 773,665 + -0.5 773,665 + -1.7 773,693 + +0.1 773,693 + -0.1 773,753 - A4249_RS03655 0.11 -0.5 773,872 + A4249_RS03655 0.24 +0.4 773,872 + A4249_RS03655 0.24 -0.7 773,872 + A4249_RS03655 0.24 +1.7 773,872 + A4249_RS03655 0.24 +2.5 773,872 + A4249_RS03655 0.24 +1.9 773,872 + A4249_RS03655 0.24 +0.3 773,873 - A4249_RS03655 0.24 -2.2 773,873 - A4249_RS03655 0.24 +0.9 773,873 - A4249_RS03655 0.24 +0.4 773,924 + A4249_RS03655 0.29 +1.2 773,924 + A4249_RS03655 0.29 -2.6 773,924 + A4249_RS03655 0.29 -0.2 773,925 - A4249_RS03655 0.29 -1.2 773,925 - A4249_RS03655 0.29 +1.4 774,228 + A4249_RS03655 0.62 -0.1 774,228 + A4249_RS03655 0.62 -0.1 774,228 + A4249_RS03655 0.62 +0.3 774,228 + A4249_RS03655 0.62 -0.7 774,228 + A4249_RS03655 0.62 +1.6 774,229 - A4249_RS03655 0.62 -0.3 774,229 - A4249_RS03655 0.62 +0.0 774,229 - A4249_RS03655 0.62 -1.4 774,229 - A4249_RS03655 0.62 -0.3 774,229 - A4249_RS03655 0.62 -0.2 774,229 - A4249_RS03655 0.62 -0.3 774,229 - A4249_RS03655 0.62 -0.1
Or see this region's nucleotide sequence