Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01465

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01460 and A4249_RS01465 are separated by 105 nucleotidesA4249_RS01465 and A4249_RS01470 are separated by 13 nucleotides A4249_RS01460: A4249_RS01460 - signal peptide peptidase SppA, at 269,986 to 271,764 _RS01460 A4249_RS01465: A4249_RS01465 - hypothetical protein, at 271,870 to 272,193 _RS01465 A4249_RS01470: A4249_RS01470 - N-acetylmuramoyl-L-alanine amidase, at 272,207 to 272,968 _RS01470 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1at 270.979 kb on + strand, within A4249_RS01460at 270.979 kb on + strand, within A4249_RS01460at 270.979 kb on + strand, within A4249_RS01460at 271.263 kb on + strand, within A4249_RS01460at 272.140 kb on + strand, within A4249_RS01465at 272.140 kb on + strand, within A4249_RS01465at 272.140 kb on + strand, within A4249_RS01465at 272.140 kb on + strand, within A4249_RS01465at 272.140 kb on + strand, within A4249_RS01465at 272.141 kb on - strand, within A4249_RS01465at 272.141 kb on - strand, within A4249_RS01465at 272.141 kb on - strand, within A4249_RS01465at 272.141 kb on - strand, within A4249_RS01465at 272.216 kb on + strandat 272.216 kb on + strandat 272.216 kb on + strandat 272.958 kb on + strandat 272.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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270,979 + A4249_RS01460 0.56 -1.2
270,979 + A4249_RS01460 0.56 -2.6
270,979 + A4249_RS01460 0.56 -2.0
271,263 + A4249_RS01460 0.72 -1.6
272,140 + A4249_RS01465 0.83 -2.8
272,140 + A4249_RS01465 0.83 -0.2
272,140 + A4249_RS01465 0.83 -0.3
272,140 + A4249_RS01465 0.83 +1.6
272,140 + A4249_RS01465 0.83 +0.6
272,141 - A4249_RS01465 0.84 -1.8
272,141 - A4249_RS01465 0.84 -1.3
272,141 - A4249_RS01465 0.84 -2.3
272,141 - A4249_RS01465 0.84 +0.0
272,216 + +0.3
272,216 + -1.2
272,216 + -3.4
272,958 + +0.0
272,959 - -1.0

Or see this region's nucleotide sequence