Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01130 and A4249_RS01135 are separated by 33 nucleotides A4249_RS01135 and A4249_RS01140 are separated by 7 nucleotides A4249_RS01140 and A4249_RS01145 are separated by 91 nucleotides A4249_RS01145 and A4249_RS01150 are separated by 98 nucleotides
A4249_RS01130: A4249_RS01130 - TDT family transporter, at 216,134 to 217,315
_RS01130
A4249_RS01135: A4249_RS01135 - DsbA family protein, at 217,349 to 217,972
_RS01135
A4249_RS01140: A4249_RS01140 - malate dehydrogenase, at 217,980 to 218,969
_RS01140
A4249_RS01145: A4249_RS01145 - OsmC family protein, at 219,061 to 219,486
_RS01145
A4249_RS01150: A4249_RS01150 - IS3 family transposase, at 219,585 to 220,774
_RS01150
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 217.007 kb on + strand, within A4249_RS01130 at 217.007 kb on + strand, within A4249_RS01130 at 217.053 kb on - strand, within A4249_RS01130 at 217.053 kb on - strand, within A4249_RS01130 at 217.053 kb on - strand, within A4249_RS01130 at 217.053 kb on - strand, within A4249_RS01130 at 217.053 kb on - strand, within A4249_RS01130 at 217.094 kb on + strand, within A4249_RS01130 at 217.094 kb on + strand, within A4249_RS01130 at 217.094 kb on + strand, within A4249_RS01130 at 217.094 kb on + strand, within A4249_RS01130 at 217.095 kb on - strand, within A4249_RS01130 at 217.228 kb on + strand at 217.229 kb on - strand at 217.229 kb on - strand at 217.493 kb on + strand, within A4249_RS01135 at 217.494 kb on - strand, within A4249_RS01135 at 217.562 kb on + strand, within A4249_RS01135 at 217.562 kb on + strand, within A4249_RS01135 at 217.563 kb on - strand, within A4249_RS01135 at 217.563 kb on - strand, within A4249_RS01135 at 217.563 kb on - strand, within A4249_RS01135 at 217.563 kb on - strand, within A4249_RS01135 at 217.592 kb on + strand, within A4249_RS01135 at 217.592 kb on + strand, within A4249_RS01135 at 217.593 kb on - strand, within A4249_RS01135 at 217.593 kb on - strand, within A4249_RS01135 at 217.670 kb on + strand, within A4249_RS01135 at 218.034 kb on + strand at 218.035 kb on - strand at 218.176 kb on + strand, within A4249_RS01140 at 218.176 kb on + strand, within A4249_RS01140 at 218.177 kb on - strand, within A4249_RS01140 at 218.177 kb on - strand, within A4249_RS01140 at 218.207 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.796 kb on + strand, within A4249_RS01140 at 218.797 kb on - strand, within A4249_RS01140 at 218.797 kb on - strand, within A4249_RS01140 at 218.797 kb on - strand, within A4249_RS01140 at 218.853 kb on + strand, within A4249_RS01140 at 218.853 kb on + strand, within A4249_RS01140 at 218.853 kb on + strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.998 kb on + strand at 218.998 kb on + strand at 218.998 kb on + strand at 218.998 kb on + strand at 218.998 kb on + strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 219.116 kb on + strand, within A4249_RS01145 at 219.116 kb on + strand, within A4249_RS01145 at 219.235 kb on - strand, within A4249_RS01145 at 219.256 kb on + strand, within A4249_RS01145 at 219.256 kb on + strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.441 kb on - strand, within A4249_RS01145 at 219.444 kb on + strand at 219.444 kb on + strand at 219.444 kb on + strand at 219.445 kb on - strand at 219.445 kb on - strand at 219.445 kb on - strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 217,007 + A4249_RS01130 0.74 -2.4 217,007 + A4249_RS01130 0.74 -1.1 217,053 - A4249_RS01130 0.78 +1.0 217,053 - A4249_RS01130 0.78 -0.3 217,053 - A4249_RS01130 0.78 +0.4 217,053 - A4249_RS01130 0.78 +0.1 217,053 - A4249_RS01130 0.78 +0.0 217,094 + A4249_RS01130 0.81 +0.0 217,094 + A4249_RS01130 0.81 +0.8 217,094 + A4249_RS01130 0.81 +0.5 217,094 + A4249_RS01130 0.81 +0.0 217,095 - A4249_RS01130 0.81 +0.6 217,228 + -0.2 217,229 - +0.1 217,229 - +1.0 217,493 + A4249_RS01135 0.23 +0.3 217,494 - A4249_RS01135 0.23 +0.4 217,562 + A4249_RS01135 0.34 +0.1 217,562 + A4249_RS01135 0.34 +0.4 217,563 - A4249_RS01135 0.34 +0.5 217,563 - A4249_RS01135 0.34 +0.3 217,563 - A4249_RS01135 0.34 -0.1 217,563 - A4249_RS01135 0.34 -0.4 217,592 + A4249_RS01135 0.39 -0.5 217,592 + A4249_RS01135 0.39 +0.8 217,593 - A4249_RS01135 0.39 +0.0 217,593 - A4249_RS01135 0.39 +0.4 217,670 + A4249_RS01135 0.51 -1.0 218,034 + -1.1 218,035 - +0.3 218,176 + A4249_RS01140 0.20 +0.7 218,176 + A4249_RS01140 0.20 -0.6 218,177 - A4249_RS01140 0.20 +1.1 218,177 - A4249_RS01140 0.20 +0.1 218,207 + A4249_RS01140 0.23 -2.5 218,729 + A4249_RS01140 0.76 +0.7 218,729 + A4249_RS01140 0.76 +1.7 218,729 + A4249_RS01140 0.76 -1.6 218,729 + A4249_RS01140 0.76 -0.5 218,729 + A4249_RS01140 0.76 +1.8 218,729 + A4249_RS01140 0.76 +1.1 218,729 + A4249_RS01140 0.76 -0.1 218,729 + A4249_RS01140 0.76 +0.4 218,730 - A4249_RS01140 0.76 -0.3 218,730 - A4249_RS01140 0.76 +0.3 218,730 - A4249_RS01140 0.76 +1.2 218,730 - A4249_RS01140 0.76 +0.0 218,796 + A4249_RS01140 0.82 +0.4 218,797 - A4249_RS01140 0.83 +0.2 218,797 - A4249_RS01140 0.83 -1.0 218,797 - A4249_RS01140 0.83 -0.4 218,853 + A4249_RS01140 0.88 -0.4 218,853 + A4249_RS01140 0.88 +0.8 218,853 + A4249_RS01140 0.88 +0.0 218,854 - A4249_RS01140 0.88 +0.2 218,854 - A4249_RS01140 0.88 +0.1 218,854 - A4249_RS01140 0.88 +1.1 218,854 - A4249_RS01140 0.88 +0.6 218,854 - A4249_RS01140 0.88 -0.4 218,998 + +0.0 218,998 + -3.3 218,998 + -0.8 218,998 + -0.1 218,998 + +3.0 218,999 - +0.0 218,999 - +1.3 218,999 - +0.3 218,999 - +0.5 218,999 - +0.3 218,999 - +0.1 218,999 - +0.0 218,999 - +0.0 218,999 - +0.4 218,999 - -1.6 219,116 + A4249_RS01145 0.13 -0.1 219,116 + A4249_RS01145 0.13 +1.8 219,235 - A4249_RS01145 0.41 -0.6 219,256 + A4249_RS01145 0.46 -2.4 219,256 + A4249_RS01145 0.46 -0.5 219,257 - A4249_RS01145 0.46 +0.3 219,257 - A4249_RS01145 0.46 +0.5 219,257 - A4249_RS01145 0.46 -0.6 219,257 - A4249_RS01145 0.46 -0.3 219,257 - A4249_RS01145 0.46 -2.6 219,440 + A4249_RS01145 0.89 +0.4 219,440 + A4249_RS01145 0.89 -0.1 219,440 + A4249_RS01145 0.89 +0.5 219,440 + A4249_RS01145 0.89 -0.7 219,440 + A4249_RS01145 0.89 +0.0 219,440 + A4249_RS01145 0.89 -0.1 219,440 + A4249_RS01145 0.89 -0.6 219,440 + A4249_RS01145 0.89 +0.2 219,440 + A4249_RS01145 0.89 +0.6 219,441 - A4249_RS01145 0.89 +0.6 219,444 + -0.7 219,444 + +0.5 219,444 + -0.9 219,445 - -0.3 219,445 - -2.8 219,445 - +0.9 219,484 + -0.8 219,484 + -1.0 219,484 + -1.2 219,484 + +0.0 219,484 + +0.0 219,484 + +0.0 219,484 + +0.8 219,485 - -0.7 219,485 - -1.1 219,485 - +1.2 219,485 - +0.0 219,485 - -0.7 219,485 - +0.0 219,485 - -0.7 219,485 - -0.6
Or see this region's nucleotide sequence