Experiment: Tween 20 (C), 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00335 and A4249_RS16420 are separated by 112 nucleotides A4249_RS16420 and A4249_RS00340 overlap by 88 nucleotides A4249_RS00340 and A4249_RS00345 overlap by 4 nucleotides
A4249_RS00335: A4249_RS00335 - ATP-binding protein, at 56,112 to 57,683
_RS00335
A4249_RS16420: A4249_RS16420 - hypothetical protein, at 57,796 to 58,182
_RS16420
A4249_RS00340: A4249_RS00340 - hypothetical protein, at 58,095 to 58,532
_RS00340
A4249_RS00345: A4249_RS00345 - glutamate--cysteine ligase, at 58,529 to 59,890
_RS00345
Position (kb) 58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.120 kb on - strand, within A4249_RS00335 at 57.221 kb on + strand, within A4249_RS00335 at 57.221 kb on + strand, within A4249_RS00335 at 57.221 kb on + strand, within A4249_RS00335 at 57.222 kb on - strand, within A4249_RS00335 at 57.222 kb on - strand, within A4249_RS00335 at 57.222 kb on - strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.331 kb on + strand, within A4249_RS00335 at 57.332 kb on - strand, within A4249_RS00335 at 57.332 kb on - strand, within A4249_RS00335 at 57.332 kb on - strand, within A4249_RS00335 at 57.332 kb on - strand, within A4249_RS00335 at 57.332 kb on - strand, within A4249_RS00335 at 57.332 kb on - strand, within A4249_RS00335 at 57.376 kb on + strand, within A4249_RS00335 at 57.376 kb on + strand, within A4249_RS00335 at 57.376 kb on + strand, within A4249_RS00335 at 57.376 kb on + strand, within A4249_RS00335 at 57.377 kb on - strand, within A4249_RS00335 at 57.377 kb on - strand, within A4249_RS00335 at 57.377 kb on - strand, within A4249_RS00335 at 57.377 kb on - strand, within A4249_RS00335 at 57.377 kb on - strand, within A4249_RS00335 at 57.377 kb on - strand, within A4249_RS00335 at 57.727 kb on + strand at 57.727 kb on + strand at 57.840 kb on - strand, within A4249_RS16420 at 57.840 kb on - strand, within A4249_RS16420 at 57.840 kb on - strand, within A4249_RS16420 at 57.959 kb on + strand, within A4249_RS16420 at 57.960 kb on - strand, within A4249_RS16420 at 57.960 kb on - strand, within A4249_RS16420 at 57.960 kb on - strand, within A4249_RS16420 at 57.960 kb on - strand, within A4249_RS16420 at 58.021 kb on + strand, within A4249_RS16420 at 58.022 kb on - strand, within A4249_RS16420 at 58.022 kb on - strand, within A4249_RS16420 at 58.098 kb on + strand at 58.098 kb on + strand at 58.098 kb on + strand at 58.099 kb on - strand at 58.099 kb on - strand at 58.099 kb on - strand at 58.099 kb on - strand at 58.099 kb on - strand at 58.099 kb on - strand at 58.138 kb on - strand at 58.269 kb on + strand, within A4249_RS00340 at 58.269 kb on + strand, within A4249_RS00340 at 58.269 kb on + strand, within A4249_RS00340 at 58.270 kb on - strand, within A4249_RS00340 at 58.270 kb on - strand, within A4249_RS00340 at 58.329 kb on + strand, within A4249_RS00340 at 58.329 kb on + strand, within A4249_RS00340 at 58.329 kb on + strand, within A4249_RS00340 at 58.329 kb on + strand, within A4249_RS00340 at 58.329 kb on + strand, within A4249_RS00340 at 58.330 kb on - strand, within A4249_RS00340 at 58.330 kb on - strand, within A4249_RS00340 at 58.330 kb on - strand, within A4249_RS00340 at 58.330 kb on - strand, within A4249_RS00340 at 58.330 kb on - strand, within A4249_RS00340 at 58.330 kb on - strand, within A4249_RS00340 at 58.483 kb on - strand, within A4249_RS00340 at 58.483 kb on - strand, within A4249_RS00340 at 58.483 kb on - strand, within A4249_RS00340 at 58.518 kb on + strand at 58.519 kb on - strand at 58.519 kb on - strand at 58.519 kb on - strand at 58.530 kb on + strand at 58.530 kb on + strand at 58.534 kb on - strand at 58.534 kb on - strand at 58.534 kb on - strand at 58.534 kb on - strand at 58.534 kb on - strand at 58.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C), 20C remove 57,120 - A4249_RS00335 0.64 -1.2 57,221 + A4249_RS00335 0.71 +1.5 57,221 + A4249_RS00335 0.71 -0.3 57,221 + A4249_RS00335 0.71 -2.0 57,222 - A4249_RS00335 0.71 -1.8 57,222 - A4249_RS00335 0.71 +3.0 57,222 - A4249_RS00335 0.71 -0.2 57,331 + A4249_RS00335 0.78 -0.7 57,331 + A4249_RS00335 0.78 -0.1 57,331 + A4249_RS00335 0.78 +0.0 57,331 + A4249_RS00335 0.78 +0.7 57,331 + A4249_RS00335 0.78 +1.0 57,331 + A4249_RS00335 0.78 +0.4 57,331 + A4249_RS00335 0.78 -1.0 57,331 + A4249_RS00335 0.78 -0.7 57,331 + A4249_RS00335 0.78 +0.5 57,331 + A4249_RS00335 0.78 +0.3 57,332 - A4249_RS00335 0.78 -0.8 57,332 - A4249_RS00335 0.78 +0.2 57,332 - A4249_RS00335 0.78 -0.0 57,332 - A4249_RS00335 0.78 -0.7 57,332 - A4249_RS00335 0.78 +0.6 57,332 - A4249_RS00335 0.78 -0.6 57,376 + A4249_RS00335 0.80 +0.4 57,376 + A4249_RS00335 0.80 -0.8 57,376 + A4249_RS00335 0.80 -0.4 57,376 + A4249_RS00335 0.80 +0.2 57,377 - A4249_RS00335 0.80 +0.9 57,377 - A4249_RS00335 0.80 -0.8 57,377 - A4249_RS00335 0.80 +0.2 57,377 - A4249_RS00335 0.80 -0.4 57,377 - A4249_RS00335 0.80 +0.0 57,377 - A4249_RS00335 0.80 -0.1 57,727 + +2.4 57,727 + -0.1 57,840 - A4249_RS16420 0.11 -0.0 57,840 - A4249_RS16420 0.11 -0.2 57,840 - A4249_RS16420 0.11 -0.4 57,959 + A4249_RS16420 0.42 -1.4 57,960 - A4249_RS16420 0.42 +0.7 57,960 - A4249_RS16420 0.42 +0.0 57,960 - A4249_RS16420 0.42 +0.8 57,960 - A4249_RS16420 0.42 -0.1 58,021 + A4249_RS16420 0.58 -0.9 58,022 - A4249_RS16420 0.58 -1.2 58,022 - A4249_RS16420 0.58 +0.0 58,098 + +0.0 58,098 + +0.6 58,098 + -0.8 58,099 - -1.9 58,099 - -0.2 58,099 - +0.5 58,099 - -1.4 58,099 - +0.2 58,099 - -0.5 58,138 - -2.3 58,269 + A4249_RS00340 0.40 +1.3 58,269 + A4249_RS00340 0.40 +1.6 58,269 + A4249_RS00340 0.40 -0.2 58,270 - A4249_RS00340 0.40 -1.0 58,270 - A4249_RS00340 0.40 +0.6 58,329 + A4249_RS00340 0.53 -0.1 58,329 + A4249_RS00340 0.53 -0.6 58,329 + A4249_RS00340 0.53 -0.4 58,329 + A4249_RS00340 0.53 -1.0 58,329 + A4249_RS00340 0.53 +0.4 58,330 - A4249_RS00340 0.54 +0.6 58,330 - A4249_RS00340 0.54 -0.7 58,330 - A4249_RS00340 0.54 +2.9 58,330 - A4249_RS00340 0.54 +1.0 58,330 - A4249_RS00340 0.54 -0.7 58,330 - A4249_RS00340 0.54 -0.9 58,483 - A4249_RS00340 0.89 +1.6 58,483 - A4249_RS00340 0.89 +1.0 58,483 - A4249_RS00340 0.89 -0.5 58,518 + -0.6 58,519 - -0.5 58,519 - +1.7 58,519 - -1.1 58,530 + -0.5 58,530 + +1.6 58,534 - +0.5 58,534 - -0.5 58,534 - -1.2 58,534 - -0.6 58,534 - -0.8 58,534 - +0.2
Or see this region's nucleotide sequence