Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00260

Experiment: Tween 20 (C), 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00255 and A4249_RS00260 are separated by 23 nucleotidesA4249_RS00260 and A4249_RS00265 are separated by 129 nucleotidesA4249_RS00265 and A4249_RS00270 are separated by 90 nucleotides A4249_RS00255: A4249_RS00255 - outer membrane beta-barrel protein, at 43,978 to 44,829 _RS00255 A4249_RS00260: A4249_RS00260 - YqgE/AlgH family protein, at 44,853 to 45,422 _RS00260 A4249_RS00265: A4249_RS00265 - peroxiredoxin, at 45,552 to 46,037 _RS00265 A4249_RS00270: A4249_RS00270 - very short patch repair endonuclease, at 46,128 to 46,517 _RS00270 Position (kb) 44 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 43.857 kb on + strandat 43.857 kb on + strandat 43.857 kb on + strandat 44.071 kb on + strand, within A4249_RS00255at 44.071 kb on + strand, within A4249_RS00255at 44.071 kb on + strand, within A4249_RS00255at 44.072 kb on - strand, within A4249_RS00255at 44.092 kb on + strand, within A4249_RS00255at 44.092 kb on + strand, within A4249_RS00255at 44.093 kb on - strand, within A4249_RS00255at 44.093 kb on - strand, within A4249_RS00255at 44.093 kb on - strand, within A4249_RS00255at 44.103 kb on + strand, within A4249_RS00255at 44.104 kb on - strand, within A4249_RS00255at 44.104 kb on - strand, within A4249_RS00255at 44.104 kb on - strand, within A4249_RS00255at 44.104 kb on - strand, within A4249_RS00255at 44.155 kb on + strand, within A4249_RS00255at 44.155 kb on + strand, within A4249_RS00255at 44.155 kb on + strand, within A4249_RS00255at 44.155 kb on + strand, within A4249_RS00255at 44.155 kb on + strand, within A4249_RS00255at 44.155 kb on + strand, within A4249_RS00255at 44.156 kb on - strand, within A4249_RS00255at 44.156 kb on - strand, within A4249_RS00255at 44.156 kb on - strand, within A4249_RS00255at 44.156 kb on - strand, within A4249_RS00255at 44.156 kb on - strand, within A4249_RS00255at 44.156 kb on - strand, within A4249_RS00255at 44.193 kb on + strand, within A4249_RS00255at 44.193 kb on + strand, within A4249_RS00255at 44.193 kb on + strand, within A4249_RS00255at 44.194 kb on - strand, within A4249_RS00255at 44.312 kb on - strand, within A4249_RS00255at 44.312 kb on - strand, within A4249_RS00255at 44.356 kb on + strand, within A4249_RS00255at 44.357 kb on - strand, within A4249_RS00255at 44.357 kb on - strand, within A4249_RS00255at 44.357 kb on - strand, within A4249_RS00255at 44.413 kb on + strand, within A4249_RS00255at 44.413 kb on + strand, within A4249_RS00255at 44.413 kb on + strand, within A4249_RS00255at 44.413 kb on + strand, within A4249_RS00255at 44.413 kb on + strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.414 kb on - strand, within A4249_RS00255at 44.467 kb on + strand, within A4249_RS00255at 44.467 kb on + strand, within A4249_RS00255at 44.467 kb on + strand, within A4249_RS00255at 44.468 kb on - strand, within A4249_RS00255at 44.468 kb on - strand, within A4249_RS00255at 44.491 kb on + strand, within A4249_RS00255at 44.491 kb on + strand, within A4249_RS00255at 44.491 kb on + strand, within A4249_RS00255at 44.491 kb on + strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.492 kb on - strand, within A4249_RS00255at 44.512 kb on + strand, within A4249_RS00255at 44.571 kb on + strand, within A4249_RS00255at 44.571 kb on + strand, within A4249_RS00255at 44.620 kb on + strand, within A4249_RS00255at 44.621 kb on - strand, within A4249_RS00255at 44.621 kb on - strand, within A4249_RS00255at 44.621 kb on - strand, within A4249_RS00255at 44.621 kb on - strand, within A4249_RS00255at 44.621 kb on - strand, within A4249_RS00255at 44.621 kb on - strand, within A4249_RS00255at 44.656 kb on + strand, within A4249_RS00255at 44.656 kb on + strand, within A4249_RS00255at 44.656 kb on + strand, within A4249_RS00255at 44.656 kb on + strand, within A4249_RS00255at 44.657 kb on - strand, within A4249_RS00255at 44.657 kb on - strand, within A4249_RS00255at 44.657 kb on - strand, within A4249_RS00255at 44.662 kb on + strand, within A4249_RS00255at 44.662 kb on + strand, within A4249_RS00255at 44.662 kb on + strand, within A4249_RS00255at 44.662 kb on + strand, within A4249_RS00255at 44.663 kb on - strand, within A4249_RS00255at 44.663 kb on - strand, within A4249_RS00255at 44.663 kb on - strand, within A4249_RS00255at 44.818 kb on + strandat 44.818 kb on + strandat 44.819 kb on - strandat 44.819 kb on - strandat 44.819 kb on - strandat 45.161 kb on + strand, within A4249_RS00260at 45.162 kb on - strand, within A4249_RS00260at 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.496 kb on + strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.497 kb on - strandat 45.762 kb on - strand, within A4249_RS00265at 45.937 kb on - strand, within A4249_RS00265at 46.035 kb on + strandat 46.035 kb on + strandat 46.035 kb on + strandat 46.036 kb on - strandat 46.036 kb on - strandat 46.036 kb on - strandat 46.036 kb on - strandat 46.036 kb on - strandat 46.066 kb on + strandat 46.067 kb on - strandat 46.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C), 20C
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43,857 + +1.2
43,857 + -0.0
43,857 + +0.3
44,071 + A4249_RS00255 0.11 +0.0
44,071 + A4249_RS00255 0.11 -1.3
44,071 + A4249_RS00255 0.11 -0.2
44,072 - A4249_RS00255 0.11 -2.0
44,092 + A4249_RS00255 0.13 +0.5
44,092 + A4249_RS00255 0.13 -0.7
44,093 - A4249_RS00255 0.13 +1.5
44,093 - A4249_RS00255 0.13 -0.8
44,093 - A4249_RS00255 0.13 +0.7
44,103 + A4249_RS00255 0.15 -1.5
44,104 - A4249_RS00255 0.15 +1.0
44,104 - A4249_RS00255 0.15 -0.3
44,104 - A4249_RS00255 0.15 -0.4
44,104 - A4249_RS00255 0.15 -0.5
44,155 + A4249_RS00255 0.21 -0.9
44,155 + A4249_RS00255 0.21 +2.6
44,155 + A4249_RS00255 0.21 -0.6
44,155 + A4249_RS00255 0.21 -0.1
44,155 + A4249_RS00255 0.21 +0.0
44,155 + A4249_RS00255 0.21 +1.0
44,156 - A4249_RS00255 0.21 -0.6
44,156 - A4249_RS00255 0.21 +0.2
44,156 - A4249_RS00255 0.21 +1.5
44,156 - A4249_RS00255 0.21 -0.1
44,156 - A4249_RS00255 0.21 -0.3
44,156 - A4249_RS00255 0.21 +1.0
44,193 + A4249_RS00255 0.25 +0.7
44,193 + A4249_RS00255 0.25 -1.1
44,193 + A4249_RS00255 0.25 -0.8
44,194 - A4249_RS00255 0.25 +0.6
44,312 - A4249_RS00255 0.39 +0.3
44,312 - A4249_RS00255 0.39 +0.2
44,356 + A4249_RS00255 0.44 -0.3
44,357 - A4249_RS00255 0.44 -0.2
44,357 - A4249_RS00255 0.44 +0.5
44,357 - A4249_RS00255 0.44 +1.6
44,413 + A4249_RS00255 0.51 -1.0
44,413 + A4249_RS00255 0.51 -2.5
44,413 + A4249_RS00255 0.51 -0.7
44,413 + A4249_RS00255 0.51 -1.2
44,413 + A4249_RS00255 0.51 +0.4
44,414 - A4249_RS00255 0.51 -1.5
44,414 - A4249_RS00255 0.51 +0.9
44,414 - A4249_RS00255 0.51 +0.0
44,414 - A4249_RS00255 0.51 +0.4
44,414 - A4249_RS00255 0.51 +0.3
44,414 - A4249_RS00255 0.51 +0.0
44,414 - A4249_RS00255 0.51 +0.7
44,414 - A4249_RS00255 0.51 +2.0
44,467 + A4249_RS00255 0.57 -0.6
44,467 + A4249_RS00255 0.57 +0.0
44,467 + A4249_RS00255 0.57 +0.6
44,468 - A4249_RS00255 0.58 +0.4
44,468 - A4249_RS00255 0.58 -1.3
44,491 + A4249_RS00255 0.60 +0.2
44,491 + A4249_RS00255 0.60 -1.1
44,491 + A4249_RS00255 0.60 -0.3
44,491 + A4249_RS00255 0.60 -2.8
44,492 - A4249_RS00255 0.60 -0.5
44,492 - A4249_RS00255 0.60 +0.1
44,492 - A4249_RS00255 0.60 -0.4
44,492 - A4249_RS00255 0.60 +1.0
44,492 - A4249_RS00255 0.60 -1.1
44,492 - A4249_RS00255 0.60 -0.7
44,492 - A4249_RS00255 0.60 -1.1
44,512 + A4249_RS00255 0.63 -0.5
44,571 + A4249_RS00255 0.70 +0.4
44,571 + A4249_RS00255 0.70 +0.6
44,620 + A4249_RS00255 0.75 +0.3
44,621 - A4249_RS00255 0.75 +1.8
44,621 - A4249_RS00255 0.75 -0.3
44,621 - A4249_RS00255 0.75 -0.9
44,621 - A4249_RS00255 0.75 +0.3
44,621 - A4249_RS00255 0.75 +0.6
44,621 - A4249_RS00255 0.75 -0.1
44,656 + A4249_RS00255 0.80 +1.4
44,656 + A4249_RS00255 0.80 +1.0
44,656 + A4249_RS00255 0.80 +1.1
44,656 + A4249_RS00255 0.80 -0.2
44,657 - A4249_RS00255 0.80 +0.3
44,657 - A4249_RS00255 0.80 -0.3
44,657 - A4249_RS00255 0.80 +0.0
44,662 + A4249_RS00255 0.80 +0.2
44,662 + A4249_RS00255 0.80 -1.4
44,662 + A4249_RS00255 0.80 +0.8
44,662 + A4249_RS00255 0.80 +1.2
44,663 - A4249_RS00255 0.80 +0.0
44,663 - A4249_RS00255 0.80 -1.5
44,663 - A4249_RS00255 0.80 +1.5
44,818 + +0.5
44,818 + -1.0
44,819 - +1.3
44,819 - -0.7
44,819 - -0.2
45,161 + A4249_RS00260 0.54 -0.8
45,162 - A4249_RS00260 0.54 +0.4
45,496 + -1.2
45,496 + -2.3
45,496 + +0.0
45,496 + +1.2
45,496 + +0.6
45,496 + -1.4
45,496 + -1.5
45,496 + -0.2
45,496 + -0.1
45,496 + +0.3
45,496 + +0.8
45,496 + +0.2
45,496 + -0.7
45,496 + -0.4
45,496 + +0.0
45,496 + +1.2
45,496 + +1.9
45,496 + +0.6
45,497 - -0.1
45,497 - +0.3
45,497 - +3.2
45,497 - -1.7
45,497 - +1.2
45,497 - -0.4
45,497 - +0.8
45,497 - +0.2
45,497 - +0.5
45,497 - +0.0
45,497 - +0.6
45,497 - +0.5
45,497 - -0.3
45,497 - -0.8
45,497 - -0.5
45,497 - +0.7
45,762 - A4249_RS00265 0.43 +0.3
45,937 - A4249_RS00265 0.79 +0.3
46,035 + -0.6
46,035 + -1.4
46,035 + +0.4
46,036 - +2.4
46,036 - +0.3
46,036 - +0.1
46,036 - +0.4
46,036 - +0.2
46,066 + -0.1
46,067 - -1.8
46,067 - +0.4

Or see this region's nucleotide sequence