Experiment: D-Glucose (C); 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS16070 and A4249_RS16075 are separated by 290 nucleotides A4249_RS16075 and A4249_RS16080 are separated by 74 nucleotides A4249_RS16080 and A4249_RS16085 are separated by 78 nucleotides
A4249_RS16070: A4249_RS16070 - LPS export ABC transporter ATP-binding protein, at 3,236,290 to 3,237,081
_RS16070
A4249_RS16075: A4249_RS16075 - RNA polymerase factor sigma-54, at 3,237,372 to 3,238,871
_RS16075
A4249_RS16080: A4249_RS16080 - ribosome-associated translation inhibitor RaiA, at 3,238,946 to 3,239,590
_RS16080
A4249_RS16085: A4249_RS16085 - PTS IIA-like nitrogen regulatory protein PtsN, at 3,239,669 to 3,240,136
_RS16085
Position (kb)
3237
3238
3239 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.092 kb on + strand at 3237.093 kb on - strand at 3237.093 kb on - strand at 3237.093 kb on - strand at 3237.093 kb on - strand at 3237.093 kb on - strand at 3237.093 kb on - strand at 3237.093 kb on - strand at 3237.188 kb on + strand at 3237.189 kb on - strand at 3237.388 kb on + strand at 3237.389 kb on - strand at 3237.651 kb on + strand, within A4249_RS16075 at 3237.651 kb on + strand, within A4249_RS16075 at 3237.651 kb on + strand, within A4249_RS16075 at 3237.651 kb on + strand, within A4249_RS16075 at 3237.651 kb on + strand, within A4249_RS16075 at 3237.651 kb on + strand, within A4249_RS16075 at 3237.652 kb on - strand, within A4249_RS16075 at 3237.652 kb on - strand, within A4249_RS16075 at 3237.652 kb on - strand, within A4249_RS16075 at 3237.894 kb on + strand, within A4249_RS16075 at 3237.894 kb on + strand, within A4249_RS16075 at 3237.894 kb on + strand, within A4249_RS16075 at 3238.326 kb on + strand, within A4249_RS16075 at 3238.327 kb on - strand, within A4249_RS16075 at 3238.327 kb on - strand, within A4249_RS16075 at 3238.439 kb on + strand, within A4249_RS16075 at 3238.440 kb on - strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.587 kb on + strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.588 kb on - strand, within A4249_RS16075 at 3238.589 kb on + strand, within A4249_RS16075 at 3238.589 kb on + strand, within A4249_RS16075 at 3238.589 kb on + strand, within A4249_RS16075 at 3238.940 kb on - strand at 3238.940 kb on - strand at 3238.940 kb on - strand at 3239.037 kb on - strand, within A4249_RS16080 at 3239.037 kb on - strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.425 kb on + strand, within A4249_RS16080 at 3239.516 kb on + strand, within A4249_RS16080 at 3239.516 kb on + strand, within A4249_RS16080 at 3239.517 kb on - strand, within A4249_RS16080 at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.588 kb on + strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.589 kb on - strand at 3239.667 kb on + strand at 3239.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 20C remove 3,237,092 + -0.2 3,237,092 + -0.6 3,237,092 + +0.2 3,237,092 + +0.6 3,237,092 + +0.9 3,237,092 + +0.3 3,237,092 + +0.3 3,237,092 + +0.6 3,237,092 + -0.1 3,237,093 - +0.4 3,237,093 - -0.7 3,237,093 - +0.3 3,237,093 - +0.9 3,237,093 - +1.1 3,237,093 - -0.2 3,237,093 - +0.3 3,237,188 + -0.5 3,237,189 - -0.1 3,237,388 + +0.0 3,237,389 - +0.2 3,237,651 + A4249_RS16075 0.19 +0.3 3,237,651 + A4249_RS16075 0.19 -1.5 3,237,651 + A4249_RS16075 0.19 +1.5 3,237,651 + A4249_RS16075 0.19 -0.5 3,237,651 + A4249_RS16075 0.19 +2.0 3,237,651 + A4249_RS16075 0.19 +2.3 3,237,652 - A4249_RS16075 0.19 +2.8 3,237,652 - A4249_RS16075 0.19 -0.7 3,237,652 - A4249_RS16075 0.19 -1.7 3,237,894 + A4249_RS16075 0.35 -1.1 3,237,894 + A4249_RS16075 0.35 +0.3 3,237,894 + A4249_RS16075 0.35 +1.7 3,238,326 + A4249_RS16075 0.64 +1.9 3,238,327 - A4249_RS16075 0.64 +0.9 3,238,327 - A4249_RS16075 0.64 -0.5 3,238,439 + A4249_RS16075 0.71 -1.5 3,238,440 - A4249_RS16075 0.71 +1.5 3,238,587 + A4249_RS16075 0.81 -1.5 3,238,587 + A4249_RS16075 0.81 -1.7 3,238,587 + A4249_RS16075 0.81 +0.3 3,238,587 + A4249_RS16075 0.81 +1.3 3,238,587 + A4249_RS16075 0.81 +4.4 3,238,587 + A4249_RS16075 0.81 -3.0 3,238,587 + A4249_RS16075 0.81 +0.8 3,238,587 + A4249_RS16075 0.81 +0.9 3,238,587 + A4249_RS16075 0.81 -1.5 3,238,587 + A4249_RS16075 0.81 +1.9 3,238,587 + A4249_RS16075 0.81 +0.6 3,238,587 + A4249_RS16075 0.81 +0.9 3,238,587 + A4249_RS16075 0.81 +1.3 3,238,587 + A4249_RS16075 0.81 +0.3 3,238,588 - A4249_RS16075 0.81 +0.5 3,238,588 - A4249_RS16075 0.81 -0.4 3,238,588 - A4249_RS16075 0.81 -0.7 3,238,588 - A4249_RS16075 0.81 +0.8 3,238,588 - A4249_RS16075 0.81 +1.0 3,238,588 - A4249_RS16075 0.81 +3.1 3,238,588 - A4249_RS16075 0.81 +0.8 3,238,588 - A4249_RS16075 0.81 +0.9 3,238,588 - A4249_RS16075 0.81 +0.3 3,238,588 - A4249_RS16075 0.81 +1.9 3,238,589 + A4249_RS16075 0.81 +0.3 3,238,589 + A4249_RS16075 0.81 +0.2 3,238,589 + A4249_RS16075 0.81 +0.2 3,238,940 - -0.5 3,238,940 - -0.7 3,238,940 - -1.2 3,239,037 - A4249_RS16080 0.14 +0.3 3,239,037 - A4249_RS16080 0.14 -1.0 3,239,425 + A4249_RS16080 0.74 +0.1 3,239,425 + A4249_RS16080 0.74 -0.9 3,239,425 + A4249_RS16080 0.74 +0.3 3,239,425 + A4249_RS16080 0.74 -1.3 3,239,516 + A4249_RS16080 0.88 -1.7 3,239,516 + A4249_RS16080 0.88 +2.6 3,239,517 - A4249_RS16080 0.89 -0.1 3,239,588 + -0.3 3,239,588 + +0.0 3,239,588 + -0.2 3,239,588 + -0.4 3,239,588 + -1.2 3,239,588 + +0.4 3,239,588 + -1.2 3,239,588 + +0.5 3,239,589 - -0.9 3,239,589 - -0.6 3,239,589 - -1.5 3,239,589 - -0.9 3,239,589 - -0.7 3,239,589 - -2.0 3,239,667 + -0.1 3,239,667 + -1.6
Or see this region's nucleotide sequence