Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16055

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16045 and A4249_RS16050 are separated by 224 nucleotidesA4249_RS16050 and A4249_RS16055 are separated by 146 nucleotidesA4249_RS16055 and A4249_RS16060 are separated by 7 nucleotidesA4249_RS16060 and A4249_RS16065 are separated by 2 nucleotides A4249_RS16045: A4249_RS16045 - WecB/TagA/CpsF family glycosyltransferase, at 3,233,169 to 3,234,029 _RS16045 A4249_RS16050: A4249_RS16050 - tRNA-Leu, at 3,234,254 to 3,234,340 _RS16050 A4249_RS16055: A4249_RS16055 - ribonuclease D, at 3,234,487 to 3,235,101 _RS16055 A4249_RS16060: A4249_RS16060 - LPS export ABC transporter periplasmic protein LptC, at 3,235,109 to 3,235,768 _RS16060 A4249_RS16065: A4249_RS16065 - LptA/OstA family protein, at 3,235,771 to 3,236,259 _RS16065 Position (kb) 3234 3235 3236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.671 kb on + strand, within A4249_RS16045at 3233.672 kb on - strand, within A4249_RS16045at 3233.672 kb on - strand, within A4249_RS16045at 3233.672 kb on - strand, within A4249_RS16045at 3233.672 kb on - strand, within A4249_RS16045at 3233.767 kb on + strand, within A4249_RS16045at 3233.767 kb on + strand, within A4249_RS16045at 3233.768 kb on - strand, within A4249_RS16045at 3233.803 kb on + strand, within A4249_RS16045at 3233.803 kb on + strand, within A4249_RS16045at 3233.803 kb on + strand, within A4249_RS16045at 3233.803 kb on + strand, within A4249_RS16045at 3233.804 kb on - strand, within A4249_RS16045at 3233.804 kb on - strand, within A4249_RS16045at 3233.804 kb on - strand, within A4249_RS16045at 3233.804 kb on - strand, within A4249_RS16045at 3234.041 kb on - strandat 3234.066 kb on + strandat 3234.079 kb on + strandat 3234.079 kb on + strandat 3234.080 kb on - strandat 3234.089 kb on + strandat 3234.089 kb on + strandat 3234.089 kb on + strandat 3234.089 kb on + strandat 3234.474 kb on + strandat 3234.474 kb on + strandat 3234.474 kb on + strandat 3234.474 kb on + strandat 3234.474 kb on + strandat 3234.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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3,233,671 + A4249_RS16045 0.58 -1.4
3,233,671 + A4249_RS16045 0.58 +0.6
3,233,671 + A4249_RS16045 0.58 +2.3
3,233,671 + A4249_RS16045 0.58 -0.6
3,233,671 + A4249_RS16045 0.58 -0.1
3,233,671 + A4249_RS16045 0.58 +0.5
3,233,671 + A4249_RS16045 0.58 -2.2
3,233,671 + A4249_RS16045 0.58 -2.0
3,233,672 - A4249_RS16045 0.58 -0.7
3,233,672 - A4249_RS16045 0.58 +0.5
3,233,672 - A4249_RS16045 0.58 -0.6
3,233,672 - A4249_RS16045 0.58 +0.3
3,233,767 + A4249_RS16045 0.69 -0.1
3,233,767 + A4249_RS16045 0.69 +0.3
3,233,768 - A4249_RS16045 0.70 -0.9
3,233,803 + A4249_RS16045 0.74 -0.1
3,233,803 + A4249_RS16045 0.74 +0.9
3,233,803 + A4249_RS16045 0.74 +1.5
3,233,803 + A4249_RS16045 0.74 -0.2
3,233,804 - A4249_RS16045 0.74 -2.2
3,233,804 - A4249_RS16045 0.74 +0.3
3,233,804 - A4249_RS16045 0.74 -1.5
3,233,804 - A4249_RS16045 0.74 +0.3
3,234,041 - -2.1
3,234,066 + -0.7
3,234,079 + -0.1
3,234,079 + -3.8
3,234,080 - -0.5
3,234,089 + -0.5
3,234,089 + -0.3
3,234,089 + -2.2
3,234,089 + -1.7
3,234,474 + -1.4
3,234,474 + +1.3
3,234,474 + +1.9
3,234,474 + -0.7
3,234,474 + -0.2
3,234,475 - -1.2

Or see this region's nucleotide sequence