Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15625

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15620 and A4249_RS15625 are separated by 74 nucleotidesA4249_RS15625 and A4249_RS15630 overlap by 1 nucleotides A4249_RS15620: A4249_RS15620 - histone deacetylase, at 3,158,722 to 3,159,663 _RS15620 A4249_RS15625: A4249_RS15625 - response regulator, at 3,159,738 to 3,160,427 _RS15625 A4249_RS15630: A4249_RS15630 - sensor histidine kinase KdpD, at 3,160,427 to 3,163,030 _RS15630 Position (kb) 3159 3160 3161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3158.819 kb on + strand, within A4249_RS15620at 3158.819 kb on + strand, within A4249_RS15620at 3158.819 kb on + strand, within A4249_RS15620at 3158.820 kb on - strand, within A4249_RS15620at 3158.820 kb on - strand, within A4249_RS15620at 3158.820 kb on - strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.876 kb on + strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.877 kb on - strand, within A4249_RS15620at 3158.960 kb on + strand, within A4249_RS15620at 3158.960 kb on + strand, within A4249_RS15620at 3158.960 kb on + strand, within A4249_RS15620at 3158.961 kb on - strand, within A4249_RS15620at 3158.961 kb on - strand, within A4249_RS15620at 3159.026 kb on + strand, within A4249_RS15620at 3159.026 kb on + strand, within A4249_RS15620at 3159.026 kb on + strand, within A4249_RS15620at 3159.026 kb on + strand, within A4249_RS15620at 3159.026 kb on + strand, within A4249_RS15620at 3159.026 kb on + strand, within A4249_RS15620at 3159.027 kb on - strand, within A4249_RS15620at 3159.027 kb on - strand, within A4249_RS15620at 3159.027 kb on - strand, within A4249_RS15620at 3159.027 kb on - strand, within A4249_RS15620at 3159.027 kb on - strand, within A4249_RS15620at 3159.060 kb on + strand, within A4249_RS15620at 3159.060 kb on + strand, within A4249_RS15620at 3159.061 kb on - strand, within A4249_RS15620at 3159.064 kb on + strand, within A4249_RS15620at 3159.064 kb on + strand, within A4249_RS15620at 3159.064 kb on + strand, within A4249_RS15620at 3159.064 kb on + strand, within A4249_RS15620at 3159.065 kb on - strand, within A4249_RS15620at 3159.065 kb on - strand, within A4249_RS15620at 3159.065 kb on - strand, within A4249_RS15620at 3159.065 kb on - strand, within A4249_RS15620at 3159.065 kb on - strand, within A4249_RS15620at 3159.082 kb on - strand, within A4249_RS15620at 3159.082 kb on - strand, within A4249_RS15620at 3159.082 kb on - strand, within A4249_RS15620at 3159.213 kb on + strand, within A4249_RS15620at 3159.461 kb on + strand, within A4249_RS15620at 3159.461 kb on + strand, within A4249_RS15620at 3159.461 kb on + strand, within A4249_RS15620at 3159.461 kb on + strand, within A4249_RS15620at 3159.462 kb on - strand, within A4249_RS15620at 3159.462 kb on - strand, within A4249_RS15620at 3159.475 kb on + strand, within A4249_RS15620at 3159.475 kb on + strand, within A4249_RS15620at 3159.476 kb on - strand, within A4249_RS15620at 3159.476 kb on - strand, within A4249_RS15620at 3159.476 kb on - strand, within A4249_RS15620at 3159.476 kb on - strand, within A4249_RS15620at 3159.476 kb on - strand, within A4249_RS15620at 3159.476 kb on - strand, within A4249_RS15620at 3159.494 kb on + strand, within A4249_RS15620at 3159.494 kb on + strand, within A4249_RS15620at 3159.494 kb on + strand, within A4249_RS15620at 3159.495 kb on - strand, within A4249_RS15620at 3159.495 kb on - strand, within A4249_RS15620at 3159.495 kb on - strand, within A4249_RS15620at 3159.572 kb on + strandat 3159.572 kb on + strandat 3159.572 kb on + strandat 3159.572 kb on + strandat 3159.573 kb on - strandat 3159.573 kb on - strandat 3159.573 kb on - strandat 3159.573 kb on - strandat 3159.573 kb on - strandat 3159.573 kb on - strandat 3159.617 kb on + strandat 3159.617 kb on + strandat 3159.618 kb on - strandat 3159.630 kb on - strandat 3159.630 kb on - strandat 3159.691 kb on + strandat 3159.691 kb on + strandat 3159.692 kb on - strandat 3159.692 kb on - strandat 3159.692 kb on - strandat 3159.844 kb on + strand, within A4249_RS15625at 3159.845 kb on - strand, within A4249_RS15625at 3159.946 kb on + strand, within A4249_RS15625at 3159.946 kb on + strand, within A4249_RS15625at 3159.946 kb on + strand, within A4249_RS15625at 3159.946 kb on + strand, within A4249_RS15625at 3160.123 kb on + strand, within A4249_RS15625at 3160.123 kb on + strand, within A4249_RS15625at 3160.123 kb on + strand, within A4249_RS15625at 3160.124 kb on - strand, within A4249_RS15625at 3160.124 kb on - strand, within A4249_RS15625at 3160.124 kb on - strand, within A4249_RS15625at 3160.204 kb on + strand, within A4249_RS15625at 3160.204 kb on + strand, within A4249_RS15625at 3160.204 kb on + strand, within A4249_RS15625at 3160.204 kb on + strand, within A4249_RS15625at 3160.204 kb on + strand, within A4249_RS15625at 3160.204 kb on + strand, within A4249_RS15625at 3160.205 kb on - strand, within A4249_RS15625at 3160.339 kb on + strand, within A4249_RS15625at 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.459 kb on + strandat 3160.460 kb on - strandat 3160.460 kb on - strandat 3160.460 kb on - strandat 3160.603 kb on + strandat 3160.710 kb on + strand, within A4249_RS15630at 3160.710 kb on + strand, within A4249_RS15630at 3160.710 kb on + strand, within A4249_RS15630at 3160.710 kb on + strand, within A4249_RS15630at 3160.710 kb on + strand, within A4249_RS15630at 3160.710 kb on + strand, within A4249_RS15630at 3160.711 kb on - strand, within A4249_RS15630at 3160.711 kb on - strand, within A4249_RS15630at 3160.711 kb on - strand, within A4249_RS15630at 3160.711 kb on - strand, within A4249_RS15630at 3160.711 kb on - strand, within A4249_RS15630at 3160.746 kb on + strand, within A4249_RS15630at 3160.746 kb on + strand, within A4249_RS15630at 3160.974 kb on + strand, within A4249_RS15630at 3160.975 kb on - strand, within A4249_RS15630at 3160.975 kb on - strand, within A4249_RS15630at 3161.052 kb on + strand, within A4249_RS15630at 3161.315 kb on + strand, within A4249_RS15630at 3161.316 kb on - strand, within A4249_RS15630at 3161.316 kb on - strand, within A4249_RS15630at 3161.316 kb on - strand, within A4249_RS15630

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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3,158,819 + A4249_RS15620 0.10 -0.8
3,158,819 + A4249_RS15620 0.10 -1.4
3,158,819 + A4249_RS15620 0.10 -0.7
3,158,820 - A4249_RS15620 0.10 +0.0
3,158,820 - A4249_RS15620 0.10 +0.3
3,158,820 - A4249_RS15620 0.10 +3.4
3,158,876 + A4249_RS15620 0.16 -0.0
3,158,876 + A4249_RS15620 0.16 -0.5
3,158,876 + A4249_RS15620 0.16 +0.8
3,158,876 + A4249_RS15620 0.16 -0.2
3,158,876 + A4249_RS15620 0.16 +0.3
3,158,876 + A4249_RS15620 0.16 +0.3
3,158,876 + A4249_RS15620 0.16 +1.5
3,158,876 + A4249_RS15620 0.16 -2.2
3,158,876 + A4249_RS15620 0.16 +0.5
3,158,877 - A4249_RS15620 0.16 -0.2
3,158,877 - A4249_RS15620 0.16 +1.6
3,158,877 - A4249_RS15620 0.16 -3.0
3,158,877 - A4249_RS15620 0.16 +0.3
3,158,877 - A4249_RS15620 0.16 -1.1
3,158,877 - A4249_RS15620 0.16 -0.1
3,158,877 - A4249_RS15620 0.16 -0.1
3,158,877 - A4249_RS15620 0.16 +0.3
3,158,960 + A4249_RS15620 0.25 +1.9
3,158,960 + A4249_RS15620 0.25 +0.0
3,158,960 + A4249_RS15620 0.25 +0.3
3,158,961 - A4249_RS15620 0.25 +0.1
3,158,961 - A4249_RS15620 0.25 +1.7
3,159,026 + A4249_RS15620 0.32 +0.2
3,159,026 + A4249_RS15620 0.32 -0.2
3,159,026 + A4249_RS15620 0.32 +1.1
3,159,026 + A4249_RS15620 0.32 -1.2
3,159,026 + A4249_RS15620 0.32 +0.2
3,159,026 + A4249_RS15620 0.32 +1.1
3,159,027 - A4249_RS15620 0.32 +0.9
3,159,027 - A4249_RS15620 0.32 -0.6
3,159,027 - A4249_RS15620 0.32 -0.8
3,159,027 - A4249_RS15620 0.32 -0.2
3,159,027 - A4249_RS15620 0.32 -1.7
3,159,060 + A4249_RS15620 0.36 +0.3
3,159,060 + A4249_RS15620 0.36 +1.3
3,159,061 - A4249_RS15620 0.36 -3.0
3,159,064 + A4249_RS15620 0.36 -0.4
3,159,064 + A4249_RS15620 0.36 +0.9
3,159,064 + A4249_RS15620 0.36 -2.8
3,159,064 + A4249_RS15620 0.36 -0.6
3,159,065 - A4249_RS15620 0.36 -1.8
3,159,065 - A4249_RS15620 0.36 +0.4
3,159,065 - A4249_RS15620 0.36 -0.4
3,159,065 - A4249_RS15620 0.36 +0.3
3,159,065 - A4249_RS15620 0.36 +0.3
3,159,082 - A4249_RS15620 0.38 -0.2
3,159,082 - A4249_RS15620 0.38 -2.6
3,159,082 - A4249_RS15620 0.38 +0.6
3,159,213 + A4249_RS15620 0.52 -0.3
3,159,461 + A4249_RS15620 0.78 -0.0
3,159,461 + A4249_RS15620 0.78 +0.3
3,159,461 + A4249_RS15620 0.78 -0.1
3,159,461 + A4249_RS15620 0.78 +0.3
3,159,462 - A4249_RS15620 0.79 +1.1
3,159,462 - A4249_RS15620 0.79 -0.7
3,159,475 + A4249_RS15620 0.80 -2.1
3,159,475 + A4249_RS15620 0.80 -2.0
3,159,476 - A4249_RS15620 0.80 +0.3
3,159,476 - A4249_RS15620 0.80 -0.1
3,159,476 - A4249_RS15620 0.80 +1.0
3,159,476 - A4249_RS15620 0.80 -0.1
3,159,476 - A4249_RS15620 0.80 -0.5
3,159,476 - A4249_RS15620 0.80 +0.5
3,159,494 + A4249_RS15620 0.82 -2.2
3,159,494 + A4249_RS15620 0.82 -0.2
3,159,494 + A4249_RS15620 0.82 -0.2
3,159,495 - A4249_RS15620 0.82 +1.1
3,159,495 - A4249_RS15620 0.82 -1.2
3,159,495 - A4249_RS15620 0.82 -2.0
3,159,572 + -0.1
3,159,572 + +0.1
3,159,572 + -0.3
3,159,572 + -1.7
3,159,573 - +0.3
3,159,573 - +0.6
3,159,573 - -0.6
3,159,573 - +0.3
3,159,573 - +0.1
3,159,573 - -1.0
3,159,617 + -1.4
3,159,617 + +0.0
3,159,618 - -1.2
3,159,630 - +0.8
3,159,630 - +0.1
3,159,691 + +0.1
3,159,691 + +1.6
3,159,692 - -0.7
3,159,692 - -1.2
3,159,692 - +1.1
3,159,844 + A4249_RS15625 0.15 -0.5
3,159,845 - A4249_RS15625 0.16 -0.3
3,159,946 + A4249_RS15625 0.30 -0.2
3,159,946 + A4249_RS15625 0.30 +1.1
3,159,946 + A4249_RS15625 0.30 +1.3
3,159,946 + A4249_RS15625 0.30 -0.0
3,160,123 + A4249_RS15625 0.56 -0.2
3,160,123 + A4249_RS15625 0.56 +0.8
3,160,123 + A4249_RS15625 0.56 -0.8
3,160,124 - A4249_RS15625 0.56 +0.3
3,160,124 - A4249_RS15625 0.56 +0.7
3,160,124 - A4249_RS15625 0.56 +0.0
3,160,204 + A4249_RS15625 0.68 -0.1
3,160,204 + A4249_RS15625 0.68 -0.0
3,160,204 + A4249_RS15625 0.68 +0.3
3,160,204 + A4249_RS15625 0.68 +0.5
3,160,204 + A4249_RS15625 0.68 -0.5
3,160,204 + A4249_RS15625 0.68 +0.9
3,160,205 - A4249_RS15625 0.68 -0.4
3,160,339 + A4249_RS15625 0.87 +0.1
3,160,459 + -0.9
3,160,459 + +2.7
3,160,459 + +0.3
3,160,459 + +0.3
3,160,459 + +0.9
3,160,459 + -3.1
3,160,459 + -1.5
3,160,459 + +0.3
3,160,460 - +0.0
3,160,460 - +1.1
3,160,460 - +1.5
3,160,603 + +0.8
3,160,710 + A4249_RS15630 0.11 -0.5
3,160,710 + A4249_RS15630 0.11 +0.1
3,160,710 + A4249_RS15630 0.11 -0.7
3,160,710 + A4249_RS15630 0.11 -0.2
3,160,710 + A4249_RS15630 0.11 +0.0
3,160,710 + A4249_RS15630 0.11 -0.7
3,160,711 - A4249_RS15630 0.11 -0.2
3,160,711 - A4249_RS15630 0.11 -0.4
3,160,711 - A4249_RS15630 0.11 +0.3
3,160,711 - A4249_RS15630 0.11 -0.7
3,160,711 - A4249_RS15630 0.11 -0.9
3,160,746 + A4249_RS15630 0.12 +0.5
3,160,746 + A4249_RS15630 0.12 -0.2
3,160,974 + A4249_RS15630 0.21 -0.2
3,160,975 - A4249_RS15630 0.21 +0.6
3,160,975 - A4249_RS15630 0.21 +1.3
3,161,052 + A4249_RS15630 0.24 -1.6
3,161,315 + A4249_RS15630 0.34 +0.1
3,161,316 - A4249_RS15630 0.34 +0.6
3,161,316 - A4249_RS15630 0.34 +0.3
3,161,316 - A4249_RS15630 0.34 -0.0

Or see this region's nucleotide sequence