Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13125

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13115 and A4249_RS13120 overlap by 4 nucleotidesA4249_RS13120 and A4249_RS13125 are separated by 64 nucleotidesA4249_RS13125 and A4249_RS13130 are separated by 66 nucleotides A4249_RS13115: A4249_RS13115 - phosphoglucosamine mutase, at 2,639,542 to 2,639,787 _RS13115 A4249_RS13120: A4249_RS13120 - hypothetical protein, at 2,639,784 to 2,640,245 _RS13120 A4249_RS13125: A4249_RS13125 - ribonuclease PH, at 2,640,310 to 2,641,035 _RS13125 A4249_RS13130: A4249_RS13130 - heat-inducible transcriptional repressor HrcA, at 2,641,102 to 2,642,196 _RS13130 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2639.390 kb on + strandat 2639.390 kb on + strandat 2639.390 kb on + strandat 2639.391 kb on - strandat 2639.393 kb on + strandat 2639.393 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.775 kb on - strandat 2639.785 kb on + strandat 2640.311 kb on + strandat 2640.507 kb on - strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.848 kb on + strand, within A4249_RS13125at 2640.849 kb on - strand, within A4249_RS13125at 2641.084 kb on + strandat 2641.084 kb on + strandat 2641.084 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.105 kb on + strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.106 kb on - strandat 2641.207 kb on + strandat 2641.207 kb on + strandat 2641.207 kb on + strandat 2641.208 kb on - strandat 2641.208 kb on - strandat 2641.410 kb on + strand, within A4249_RS13130at 2641.410 kb on + strand, within A4249_RS13130at 2641.410 kb on + strand, within A4249_RS13130at 2641.410 kb on + strand, within A4249_RS13130at 2641.411 kb on - strand, within A4249_RS13130at 2641.411 kb on - strand, within A4249_RS13130

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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2,639,390 + +2.3
2,639,390 + +0.2
2,639,390 + +0.4
2,639,391 - -0.3
2,639,393 + -0.6
2,639,393 + -0.0
2,639,516 + +0.7
2,639,516 + -0.4
2,639,516 + -1.4
2,639,516 + -1.4
2,639,516 + -0.8
2,639,516 + -2.9
2,639,516 + +0.4
2,639,516 + +0.2
2,639,516 + +1.4
2,639,517 - +0.2
2,639,517 - +3.2
2,639,517 - +1.5
2,639,517 - -2.2
2,639,517 - -1.8
2,639,517 - -2.2
2,639,517 - -1.2
2,639,517 - +0.4
2,639,517 - -0.2
2,639,517 - +0.4
2,639,517 - -0.2
2,639,775 - -1.3
2,639,785 + -0.1
2,640,311 + +0.4
2,640,507 - A4249_RS13125 0.27 -1.2
2,640,608 + A4249_RS13125 0.41 +0.2
2,640,608 + A4249_RS13125 0.41 +1.4
2,640,608 + A4249_RS13125 0.41 -0.7
2,640,609 - A4249_RS13125 0.41 +1.0
2,640,609 - A4249_RS13125 0.41 +0.8
2,640,609 - A4249_RS13125 0.41 -1.6
2,640,848 + A4249_RS13125 0.74 -0.6
2,640,849 - A4249_RS13125 0.74 +0.1
2,641,084 + -0.4
2,641,084 + +0.3
2,641,084 + +0.3
2,641,105 + -0.8
2,641,105 + +0.4
2,641,105 + -0.0
2,641,105 + -0.8
2,641,105 + -0.8
2,641,106 - +0.2
2,641,106 - +0.8
2,641,106 - -0.7
2,641,106 - -0.2
2,641,106 - +0.1
2,641,207 + +1.0
2,641,207 + +0.1
2,641,207 + -1.9
2,641,208 - +0.4
2,641,208 - -0.8
2,641,410 + A4249_RS13130 0.28 -1.2
2,641,410 + A4249_RS13130 0.28 -1.6
2,641,410 + A4249_RS13130 0.28 -1.3
2,641,410 + A4249_RS13130 0.28 -0.5
2,641,411 - A4249_RS13130 0.28 +0.4
2,641,411 - A4249_RS13130 0.28 -0.2

Or see this region's nucleotide sequence