Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12910

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12900 and A4249_RS12905 are separated by 45 nucleotidesA4249_RS12905 and A4249_RS12910 overlap by 4 nucleotidesA4249_RS12910 and A4249_RS12915 are separated by 142 nucleotidesA4249_RS12915 and A4249_RS12920 are separated by 3 nucleotides A4249_RS12900: A4249_RS12900 - lipocalin family protein, at 2,588,129 to 2,588,653 _RS12900 A4249_RS12905: A4249_RS12905 - DNA repair putative endonuclease MmcB, at 2,588,699 to 2,589,142 _RS12905 A4249_RS12910: A4249_RS12910 - NlpC/P60 family protein, at 2,589,139 to 2,589,921 _RS12910 A4249_RS12915: A4249_RS12915 - hypothetical protein, at 2,590,064 to 2,590,585 _RS12915 A4249_RS12920: A4249_RS12920 - leucyl aminopeptidase family protein, at 2,590,589 to 2,591,974 _RS12920 Position (kb) 2589 2590Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2588.474 kb on + strand, within A4249_RS12900at 2588.475 kb on - strand, within A4249_RS12900at 2588.475 kb on - strand, within A4249_RS12900at 2588.483 kb on + strand, within A4249_RS12900at 2588.483 kb on + strand, within A4249_RS12900at 2588.483 kb on + strand, within A4249_RS12900at 2588.483 kb on + strand, within A4249_RS12900at 2588.483 kb on + strand, within A4249_RS12900at 2588.484 kb on - strand, within A4249_RS12900at 2588.484 kb on - strand, within A4249_RS12900at 2588.484 kb on - strand, within A4249_RS12900at 2588.484 kb on - strand, within A4249_RS12900at 2588.484 kb on - strand, within A4249_RS12900at 2588.484 kb on - strand, within A4249_RS12900at 2588.501 kb on + strand, within A4249_RS12900at 2588.501 kb on + strand, within A4249_RS12900at 2588.501 kb on + strand, within A4249_RS12900at 2588.502 kb on - strand, within A4249_RS12900at 2588.502 kb on - strand, within A4249_RS12900at 2588.590 kb on + strand, within A4249_RS12900at 2588.651 kb on + strandat 2588.652 kb on - strandat 2588.652 kb on - strandat 2588.652 kb on - strandat 2588.677 kb on - strandat 2588.677 kb on - strandat 2588.687 kb on + strandat 2588.688 kb on - strandat 2588.688 kb on - strandat 2588.688 kb on - strandat 2588.688 kb on - strandat 2588.795 kb on + strand, within A4249_RS12905at 2588.796 kb on - strand, within A4249_RS12905at 2588.796 kb on - strand, within A4249_RS12905at 2588.796 kb on - strand, within A4249_RS12905at 2588.796 kb on - strand, within A4249_RS12905at 2588.933 kb on + strand, within A4249_RS12905at 2588.933 kb on + strand, within A4249_RS12905at 2588.934 kb on - strand, within A4249_RS12905at 2588.934 kb on - strand, within A4249_RS12905at 2589.140 kb on + strandat 2589.953 kb on - strandat 2590.390 kb on - strand, within A4249_RS12915at 2590.401 kb on + strand, within A4249_RS12915at 2590.402 kb on - strand, within A4249_RS12915at 2590.599 kb on + strandat 2590.599 kb on + strandat 2590.600 kb on - strandat 2590.620 kb on + strandat 2590.620 kb on + strandat 2590.620 kb on + strandat 2590.621 kb on - strandat 2590.621 kb on - strandat 2590.621 kb on - strandat 2590.631 kb on + strandat 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.915 kb on + strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.916 kb on - strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.917 kb on + strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920at 2590.918 kb on - strand, within A4249_RS12920

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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2,588,474 + A4249_RS12900 0.66 -0.0
2,588,475 - A4249_RS12900 0.66 -0.1
2,588,475 - A4249_RS12900 0.66 -3.1
2,588,483 + A4249_RS12900 0.67 -0.2
2,588,483 + A4249_RS12900 0.67 +0.1
2,588,483 + A4249_RS12900 0.67 -0.1
2,588,483 + A4249_RS12900 0.67 -0.3
2,588,483 + A4249_RS12900 0.67 +0.0
2,588,484 - A4249_RS12900 0.68 -0.3
2,588,484 - A4249_RS12900 0.68 -0.9
2,588,484 - A4249_RS12900 0.68 +1.6
2,588,484 - A4249_RS12900 0.68 +1.6
2,588,484 - A4249_RS12900 0.68 +0.1
2,588,484 - A4249_RS12900 0.68 +0.5
2,588,501 + A4249_RS12900 0.71 -1.0
2,588,501 + A4249_RS12900 0.71 +0.2
2,588,501 + A4249_RS12900 0.71 +1.0
2,588,502 - A4249_RS12900 0.71 +3.0
2,588,502 - A4249_RS12900 0.71 -0.5
2,588,590 + A4249_RS12900 0.88 -0.5
2,588,651 + -0.2
2,588,652 - +0.4
2,588,652 - +0.5
2,588,652 - -0.1
2,588,677 - +1.8
2,588,677 - +0.4
2,588,687 + -0.3
2,588,688 - -0.1
2,588,688 - -0.1
2,588,688 - -0.1
2,588,688 - +0.7
2,588,795 + A4249_RS12905 0.22 +0.3
2,588,796 - A4249_RS12905 0.22 -1.5
2,588,796 - A4249_RS12905 0.22 -2.6
2,588,796 - A4249_RS12905 0.22 -1.2
2,588,796 - A4249_RS12905 0.22 -0.7
2,588,933 + A4249_RS12905 0.53 -0.2
2,588,933 + A4249_RS12905 0.53 -1.0
2,588,934 - A4249_RS12905 0.53 +1.0
2,588,934 - A4249_RS12905 0.53 +0.1
2,589,140 + +0.3
2,589,953 - -0.6
2,590,390 - A4249_RS12915 0.62 -1.9
2,590,401 + A4249_RS12915 0.65 -0.2
2,590,402 - A4249_RS12915 0.65 -0.7
2,590,599 + +1.4
2,590,599 + -0.9
2,590,600 - -0.2
2,590,620 + -0.8
2,590,620 + -2.8
2,590,620 + +0.4
2,590,621 - -0.9
2,590,621 - +0.2
2,590,621 - +0.8
2,590,631 + +0.2
2,590,915 + A4249_RS12920 0.24 -0.8
2,590,915 + A4249_RS12920 0.24 -1.4
2,590,915 + A4249_RS12920 0.24 +0.2
2,590,915 + A4249_RS12920 0.24 +1.3
2,590,915 + A4249_RS12920 0.24 +0.5
2,590,916 - A4249_RS12920 0.24 -0.0
2,590,916 - A4249_RS12920 0.24 +0.9
2,590,916 - A4249_RS12920 0.24 +0.4
2,590,916 - A4249_RS12920 0.24 +0.3
2,590,916 - A4249_RS12920 0.24 +0.1
2,590,916 - A4249_RS12920 0.24 -2.4
2,590,917 + A4249_RS12920 0.24 -0.6
2,590,917 + A4249_RS12920 0.24 -1.3
2,590,917 + A4249_RS12920 0.24 -1.8
2,590,917 + A4249_RS12920 0.24 +1.0
2,590,917 + A4249_RS12920 0.24 -0.1
2,590,917 + A4249_RS12920 0.24 +0.8
2,590,917 + A4249_RS12920 0.24 +2.0
2,590,918 - A4249_RS12920 0.24 +0.1
2,590,918 - A4249_RS12920 0.24 -0.3
2,590,918 - A4249_RS12920 0.24 -0.1
2,590,918 - A4249_RS12920 0.24 -0.3

Or see this region's nucleotide sequence