Experiment: D-Glucose (C); 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12900 and A4249_RS12905 are separated by 45 nucleotides A4249_RS12905 and A4249_RS12910 overlap by 4 nucleotides A4249_RS12910 and A4249_RS12915 are separated by 142 nucleotides A4249_RS12915 and A4249_RS12920 are separated by 3 nucleotides
A4249_RS12900: A4249_RS12900 - lipocalin family protein, at 2,588,129 to 2,588,653
_RS12900
A4249_RS12905: A4249_RS12905 - DNA repair putative endonuclease MmcB, at 2,588,699 to 2,589,142
_RS12905
A4249_RS12910: A4249_RS12910 - NlpC/P60 family protein, at 2,589,139 to 2,589,921
_RS12910
A4249_RS12915: A4249_RS12915 - hypothetical protein, at 2,590,064 to 2,590,585
_RS12915
A4249_RS12920: A4249_RS12920 - leucyl aminopeptidase family protein, at 2,590,589 to 2,591,974
_RS12920
Position (kb)
2589
2590 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2588.474 kb on + strand, within A4249_RS12900 at 2588.475 kb on - strand, within A4249_RS12900 at 2588.475 kb on - strand, within A4249_RS12900 at 2588.483 kb on + strand, within A4249_RS12900 at 2588.483 kb on + strand, within A4249_RS12900 at 2588.483 kb on + strand, within A4249_RS12900 at 2588.483 kb on + strand, within A4249_RS12900 at 2588.483 kb on + strand, within A4249_RS12900 at 2588.484 kb on - strand, within A4249_RS12900 at 2588.484 kb on - strand, within A4249_RS12900 at 2588.484 kb on - strand, within A4249_RS12900 at 2588.484 kb on - strand, within A4249_RS12900 at 2588.484 kb on - strand, within A4249_RS12900 at 2588.484 kb on - strand, within A4249_RS12900 at 2588.501 kb on + strand, within A4249_RS12900 at 2588.501 kb on + strand, within A4249_RS12900 at 2588.501 kb on + strand, within A4249_RS12900 at 2588.502 kb on - strand, within A4249_RS12900 at 2588.502 kb on - strand, within A4249_RS12900 at 2588.590 kb on + strand, within A4249_RS12900 at 2588.651 kb on + strand at 2588.652 kb on - strand at 2588.652 kb on - strand at 2588.652 kb on - strand at 2588.677 kb on - strand at 2588.677 kb on - strand at 2588.687 kb on + strand at 2588.688 kb on - strand at 2588.688 kb on - strand at 2588.688 kb on - strand at 2588.688 kb on - strand at 2588.795 kb on + strand, within A4249_RS12905 at 2588.796 kb on - strand, within A4249_RS12905 at 2588.796 kb on - strand, within A4249_RS12905 at 2588.796 kb on - strand, within A4249_RS12905 at 2588.796 kb on - strand, within A4249_RS12905 at 2588.933 kb on + strand, within A4249_RS12905 at 2588.933 kb on + strand, within A4249_RS12905 at 2588.934 kb on - strand, within A4249_RS12905 at 2588.934 kb on - strand, within A4249_RS12905 at 2589.140 kb on + strand at 2589.953 kb on - strand at 2590.390 kb on - strand, within A4249_RS12915 at 2590.401 kb on + strand, within A4249_RS12915 at 2590.402 kb on - strand, within A4249_RS12915 at 2590.599 kb on + strand at 2590.599 kb on + strand at 2590.600 kb on - strand at 2590.620 kb on + strand at 2590.620 kb on + strand at 2590.620 kb on + strand at 2590.621 kb on - strand at 2590.621 kb on - strand at 2590.621 kb on - strand at 2590.631 kb on + strand at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.915 kb on + strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.916 kb on - strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.917 kb on + strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920 at 2590.918 kb on - strand, within A4249_RS12920
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 20C remove 2,588,474 + A4249_RS12900 0.66 -0.0 2,588,475 - A4249_RS12900 0.66 -0.1 2,588,475 - A4249_RS12900 0.66 -3.1 2,588,483 + A4249_RS12900 0.67 -0.2 2,588,483 + A4249_RS12900 0.67 +0.1 2,588,483 + A4249_RS12900 0.67 -0.1 2,588,483 + A4249_RS12900 0.67 -0.3 2,588,483 + A4249_RS12900 0.67 +0.0 2,588,484 - A4249_RS12900 0.68 -0.3 2,588,484 - A4249_RS12900 0.68 -0.9 2,588,484 - A4249_RS12900 0.68 +1.6 2,588,484 - A4249_RS12900 0.68 +1.6 2,588,484 - A4249_RS12900 0.68 +0.1 2,588,484 - A4249_RS12900 0.68 +0.5 2,588,501 + A4249_RS12900 0.71 -1.0 2,588,501 + A4249_RS12900 0.71 +0.2 2,588,501 + A4249_RS12900 0.71 +1.0 2,588,502 - A4249_RS12900 0.71 +3.0 2,588,502 - A4249_RS12900 0.71 -0.5 2,588,590 + A4249_RS12900 0.88 -0.5 2,588,651 + -0.2 2,588,652 - +0.4 2,588,652 - +0.5 2,588,652 - -0.1 2,588,677 - +1.8 2,588,677 - +0.4 2,588,687 + -0.3 2,588,688 - -0.1 2,588,688 - -0.1 2,588,688 - -0.1 2,588,688 - +0.7 2,588,795 + A4249_RS12905 0.22 +0.3 2,588,796 - A4249_RS12905 0.22 -1.5 2,588,796 - A4249_RS12905 0.22 -2.6 2,588,796 - A4249_RS12905 0.22 -1.2 2,588,796 - A4249_RS12905 0.22 -0.7 2,588,933 + A4249_RS12905 0.53 -0.2 2,588,933 + A4249_RS12905 0.53 -1.0 2,588,934 - A4249_RS12905 0.53 +1.0 2,588,934 - A4249_RS12905 0.53 +0.1 2,589,140 + +0.3 2,589,953 - -0.6 2,590,390 - A4249_RS12915 0.62 -1.9 2,590,401 + A4249_RS12915 0.65 -0.2 2,590,402 - A4249_RS12915 0.65 -0.7 2,590,599 + +1.4 2,590,599 + -0.9 2,590,600 - -0.2 2,590,620 + -0.8 2,590,620 + -2.8 2,590,620 + +0.4 2,590,621 - -0.9 2,590,621 - +0.2 2,590,621 - +0.8 2,590,631 + +0.2 2,590,915 + A4249_RS12920 0.24 -0.8 2,590,915 + A4249_RS12920 0.24 -1.4 2,590,915 + A4249_RS12920 0.24 +0.2 2,590,915 + A4249_RS12920 0.24 +1.3 2,590,915 + A4249_RS12920 0.24 +0.5 2,590,916 - A4249_RS12920 0.24 -0.0 2,590,916 - A4249_RS12920 0.24 +0.9 2,590,916 - A4249_RS12920 0.24 +0.4 2,590,916 - A4249_RS12920 0.24 +0.3 2,590,916 - A4249_RS12920 0.24 +0.1 2,590,916 - A4249_RS12920 0.24 -2.4 2,590,917 + A4249_RS12920 0.24 -0.6 2,590,917 + A4249_RS12920 0.24 -1.3 2,590,917 + A4249_RS12920 0.24 -1.8 2,590,917 + A4249_RS12920 0.24 +1.0 2,590,917 + A4249_RS12920 0.24 -0.1 2,590,917 + A4249_RS12920 0.24 +0.8 2,590,917 + A4249_RS12920 0.24 +2.0 2,590,918 - A4249_RS12920 0.24 +0.1 2,590,918 - A4249_RS12920 0.24 -0.3 2,590,918 - A4249_RS12920 0.24 -0.1 2,590,918 - A4249_RS12920 0.24 -0.3
Or see this region's nucleotide sequence