Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12370

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12365 and A4249_RS12370 overlap by 4 nucleotidesA4249_RS12370 and A4249_RS12375 are separated by 119 nucleotidesA4249_RS12375 and A4249_RS12380 are separated by 3 nucleotides A4249_RS12365: A4249_RS12365 - D-glycerate dehydrogenase, at 2,480,972 to 2,481,958 _RS12365 A4249_RS12370: A4249_RS12370 - hypothetical protein, at 2,481,955 to 2,483,163 _RS12370 A4249_RS12375: A4249_RS12375 - hypothetical protein, at 2,483,283 to 2,483,534 _RS12375 A4249_RS12380: A4249_RS12380 - molybdopterin-synthase adenylyltransferase MoeB, at 2,483,538 to 2,484,272 _RS12380 Position (kb) 2481 2482 2483 2484Strain fitness (log2 ratio) -3 -2 -1 0 1at 2480.990 kb on - strandat 2480.990 kb on - strandat 2481.223 kb on + strand, within A4249_RS12365at 2481.224 kb on - strand, within A4249_RS12365at 2481.224 kb on - strand, within A4249_RS12365at 2481.224 kb on - strand, within A4249_RS12365at 2481.434 kb on - strand, within A4249_RS12365at 2481.503 kb on + strand, within A4249_RS12365at 2481.503 kb on + strand, within A4249_RS12365at 2481.503 kb on + strand, within A4249_RS12365at 2481.557 kb on + strand, within A4249_RS12365at 2481.557 kb on + strand, within A4249_RS12365at 2481.557 kb on + strand, within A4249_RS12365at 2481.557 kb on + strand, within A4249_RS12365at 2481.558 kb on - strand, within A4249_RS12365at 2481.908 kb on + strandat 2481.908 kb on + strandat 2481.908 kb on + strandat 2481.908 kb on + strandat 2481.909 kb on - strandat 2481.909 kb on - strandat 2481.909 kb on - strandat 2481.909 kb on - strandat 2481.909 kb on - strandat 2481.909 kb on - strandat 2481.909 kb on - strandat 2481.956 kb on + strandat 2481.992 kb on + strandat 2481.992 kb on + strandat 2481.993 kb on - strandat 2482.136 kb on + strand, within A4249_RS12370at 2482.136 kb on + strand, within A4249_RS12370at 2482.137 kb on - strand, within A4249_RS12370at 2482.192 kb on + strand, within A4249_RS12370at 2482.205 kb on + strand, within A4249_RS12370at 2482.564 kb on - strand, within A4249_RS12370at 2482.585 kb on - strand, within A4249_RS12370at 2482.658 kb on + strand, within A4249_RS12370at 2482.658 kb on + strand, within A4249_RS12370at 2482.694 kb on - strand, within A4249_RS12370at 2483.292 kb on + strandat 2483.292 kb on + strandat 2483.292 kb on + strandat 2483.293 kb on - strandat 2483.293 kb on - strandat 2483.293 kb on - strandat 2483.295 kb on + strandat 2483.295 kb on + strandat 2483.295 kb on + strandat 2483.295 kb on + strandat 2483.295 kb on + strandat 2483.296 kb on - strandat 2483.296 kb on - strandat 2483.296 kb on - strandat 2483.296 kb on - strandat 2483.296 kb on - strandat 2483.421 kb on + strand, within A4249_RS12375at 2483.421 kb on + strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.422 kb on - strand, within A4249_RS12375at 2483.427 kb on + strand, within A4249_RS12375at 2483.428 kb on - strand, within A4249_RS12375

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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2,480,990 - -1.2
2,480,990 - +0.6
2,481,223 + A4249_RS12365 0.25 +0.2
2,481,224 - A4249_RS12365 0.26 -0.5
2,481,224 - A4249_RS12365 0.26 -0.6
2,481,224 - A4249_RS12365 0.26 +0.3
2,481,434 - A4249_RS12365 0.47 -0.0
2,481,503 + A4249_RS12365 0.54 -0.3
2,481,503 + A4249_RS12365 0.54 +0.7
2,481,503 + A4249_RS12365 0.54 -0.6
2,481,557 + A4249_RS12365 0.59 +0.6
2,481,557 + A4249_RS12365 0.59 +0.2
2,481,557 + A4249_RS12365 0.59 -0.5
2,481,557 + A4249_RS12365 0.59 +1.1
2,481,558 - A4249_RS12365 0.59 -0.2
2,481,908 + -3.4
2,481,908 + +1.0
2,481,908 + -0.3
2,481,908 + +0.5
2,481,909 - -1.2
2,481,909 - -0.2
2,481,909 - -0.6
2,481,909 - +0.0
2,481,909 - -0.6
2,481,909 - +0.2
2,481,909 - -1.0
2,481,956 + -0.2
2,481,992 + +0.4
2,481,992 + -0.0
2,481,993 - -0.0
2,482,136 + A4249_RS12370 0.15 +0.0
2,482,136 + A4249_RS12370 0.15 +0.1
2,482,137 - A4249_RS12370 0.15 -1.8
2,482,192 + A4249_RS12370 0.20 -0.7
2,482,205 + A4249_RS12370 0.21 +0.2
2,482,564 - A4249_RS12370 0.50 -0.2
2,482,585 - A4249_RS12370 0.52 +0.6
2,482,658 + A4249_RS12370 0.58 +0.1
2,482,658 + A4249_RS12370 0.58 -1.4
2,482,694 - A4249_RS12370 0.61 +0.4
2,483,292 + -2.4
2,483,292 + +0.2
2,483,292 + +1.7
2,483,293 - +0.8
2,483,293 - -1.3
2,483,293 - -0.5
2,483,295 + -0.9
2,483,295 + +0.4
2,483,295 + -1.1
2,483,295 + +0.4
2,483,295 + -0.4
2,483,296 - -0.5
2,483,296 - -1.0
2,483,296 - +0.3
2,483,296 - +0.5
2,483,296 - +0.4
2,483,421 + A4249_RS12375 0.55 -0.6
2,483,421 + A4249_RS12375 0.55 +1.7
2,483,422 - A4249_RS12375 0.55 -1.0
2,483,422 - A4249_RS12375 0.55 +1.6
2,483,422 - A4249_RS12375 0.55 +1.0
2,483,422 - A4249_RS12375 0.55 -1.6
2,483,427 + A4249_RS12375 0.57 -2.4
2,483,428 - A4249_RS12375 0.58 -0.2

Or see this region's nucleotide sequence