Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11005

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11000 and A4249_RS16350 are separated by 479 nucleotidesA4249_RS16350 and A4249_RS11005 overlap by 44 nucleotidesA4249_RS11005 and A4249_RS11010 are separated by 755 nucleotides A4249_RS11000: A4249_RS11000 - peptide chain release factor N(5)-glutamine methyltransferase, at 2,207,831 to 2,208,742 _RS11000 A4249_RS16350: A4249_RS16350 - DUF488 domain-containing protein, at 2,209,222 to 2,209,659 _RS16350 A4249_RS11005: A4249_RS11005 - DUF488 domain-containing protein, at 2,209,616 to 2,210,245 _RS11005 A4249_RS11010: A4249_RS11010 - ATP-dependent chaperone ClpB, at 2,211,001 to 2,213,589 _RS11010 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2208.778 kb on + strandat 2208.778 kb on + strandat 2208.778 kb on + strandat 2208.779 kb on - strandat 2208.779 kb on - strandat 2208.787 kb on + strandat 2208.788 kb on - strandat 2208.956 kb on - strandat 2209.154 kb on + strandat 2209.155 kb on - strandat 2209.155 kb on - strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.164 kb on + strandat 2209.165 kb on - strandat 2209.223 kb on + strandat 2209.223 kb on + strandat 2209.273 kb on + strand, within A4249_RS16350at 2209.345 kb on - strand, within A4249_RS16350at 2209.647 kb on - strandat 2210.252 kb on + strandat 2210.253 kb on - strandat 2210.412 kb on + strandat 2210.412 kb on + strandat 2210.413 kb on - strandat 2210.413 kb on - strandat 2210.413 kb on - strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.434 kb on + strandat 2210.434 kb on + strandat 2210.434 kb on + strandat 2210.435 kb on - strandat 2210.446 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.463 kb on + strandat 2210.464 kb on - strandat 2210.481 kb on - strandat 2210.492 kb on + strandat 2210.554 kb on + strandat 2210.554 kb on + strandat 2210.555 kb on - strandat 2210.555 kb on - strandat 2210.555 kb on - strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.594 kb on + strandat 2210.594 kb on + strandat 2210.595 kb on - strandat 2210.595 kb on - strandat 2210.679 kb on + strandat 2210.679 kb on + strandat 2210.693 kb on - strandat 2210.724 kb on + strandat 2210.725 kb on - strandat 2210.795 kb on + strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.836 kb on - strandat 2210.844 kb on + strandat 2210.844 kb on + strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.899 kb on - strandat 2210.908 kb on - strandat 2210.908 kb on - strandat 2210.914 kb on + strandat 2210.914 kb on + strandat 2210.915 kb on - strandat 2210.922 kb on - strandat 2210.922 kb on - strandat 2210.973 kb on + strandat 2210.980 kb on + strandat 2211.002 kb on + strandat 2211.003 kb on - strandat 2211.153 kb on - strandat 2211.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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2,208,778 + -0.2
2,208,778 + -0.9
2,208,778 + -0.9
2,208,779 - +0.1
2,208,779 - +2.0
2,208,787 + +0.9
2,208,788 - +1.1
2,208,956 - +0.5
2,209,154 + +0.7
2,209,155 - +2.1
2,209,155 - +0.1
2,209,164 + +0.4
2,209,164 + +1.8
2,209,164 + +1.1
2,209,164 + +0.1
2,209,164 + -0.1
2,209,164 + -0.9
2,209,164 + -1.2
2,209,164 + -1.3
2,209,164 + -0.4
2,209,164 + -0.1
2,209,165 - -0.3
2,209,223 + -0.6
2,209,223 + -0.4
2,209,273 + A4249_RS16350 0.12 -0.2
2,209,345 - A4249_RS16350 0.28 +3.4
2,209,647 - -0.5
2,210,252 + +0.1
2,210,253 - +0.5
2,210,412 + -0.6
2,210,412 + -0.4
2,210,413 - +0.2
2,210,413 - +2.7
2,210,413 - -0.6
2,210,426 + +0.2
2,210,426 + +1.7
2,210,426 + +0.1
2,210,426 + -1.3
2,210,426 + -0.8
2,210,426 + -0.6
2,210,426 + +0.7
2,210,426 + -0.4
2,210,427 - -1.2
2,210,427 - -0.3
2,210,427 - -0.0
2,210,427 - -0.2
2,210,427 - +3.0
2,210,427 - +0.5
2,210,427 - -0.3
2,210,427 - +0.4
2,210,427 - +1.4
2,210,427 - +0.4
2,210,427 - -0.4
2,210,427 - +0.8
2,210,427 - +2.1
2,210,427 - +0.1
2,210,427 - -0.5
2,210,427 - +0.9
2,210,427 - +0.2
2,210,434 + -0.1
2,210,434 + -0.3
2,210,434 + +1.0
2,210,435 - -1.0
2,210,446 + -0.3
2,210,451 + -0.3
2,210,451 + +0.1
2,210,451 + +1.0
2,210,451 + +0.2
2,210,451 + +1.1
2,210,451 + -0.3
2,210,452 - +1.1
2,210,452 - +0.4
2,210,452 - +0.9
2,210,452 - -0.6
2,210,452 - -0.1
2,210,452 - -0.0
2,210,452 - -0.9
2,210,463 + +0.1
2,210,464 - -0.1
2,210,481 - -1.3
2,210,492 + -1.1
2,210,554 + -0.3
2,210,554 + +1.5
2,210,555 - -0.5
2,210,555 - -0.0
2,210,555 - -1.6
2,210,561 + -1.8
2,210,561 + +0.4
2,210,561 + +0.4
2,210,561 + -0.4
2,210,561 + -1.7
2,210,562 - -0.4
2,210,562 - -0.9
2,210,562 - -1.7
2,210,562 - +0.4
2,210,562 - -0.3
2,210,562 - +1.7
2,210,562 - +0.2
2,210,562 - +0.4
2,210,562 - -2.2
2,210,594 + -0.3
2,210,594 + -0.6
2,210,595 - +1.2
2,210,595 - +1.4
2,210,679 + +0.1
2,210,679 + -1.2
2,210,693 - -1.3
2,210,724 + -1.7
2,210,725 - -0.9
2,210,795 + -1.4
2,210,796 - -0.3
2,210,796 - -2.3
2,210,796 - -0.0
2,210,796 - -0.2
2,210,796 - +1.0
2,210,796 - -0.6
2,210,836 - +0.1
2,210,844 + -2.2
2,210,844 + -0.3
2,210,845 - -0.1
2,210,845 - -0.7
2,210,845 - -0.4
2,210,845 - -0.4
2,210,845 - +1.7
2,210,845 - +0.5
2,210,899 - +0.4
2,210,908 - -0.8
2,210,908 - -1.6
2,210,914 + +0.3
2,210,914 + -0.5
2,210,915 - -2.2
2,210,922 - +0.4
2,210,922 - +0.3
2,210,973 + +0.1
2,210,980 + -2.6
2,211,002 + -0.9
2,211,003 - +0.5
2,211,153 - +0.1
2,211,164 + -0.7

Or see this region's nucleotide sequence