Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10490

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10480 and A4249_RS10485 are separated by 5 nucleotidesA4249_RS10485 and A4249_RS10490 are separated by 27 nucleotidesA4249_RS10490 and A4249_RS10495 are separated by 138 nucleotidesA4249_RS10495 and A4249_RS10500 are separated by 16 nucleotides A4249_RS10480: A4249_RS10480 - DUF1190 domain-containing protein, at 2,109,037 to 2,109,663 _RS10480 A4249_RS10485: A4249_RS10485 - DUF350 domain-containing protein, at 2,109,669 to 2,110,082 _RS10485 A4249_RS10490: A4249_RS10490 - YjfK family protein, at 2,110,110 to 2,110,757 _RS10490 A4249_RS10495: A4249_RS10495 - DUF2170 family protein, at 2,110,896 to 2,111,576 _RS10495 A4249_RS10500: A4249_RS10500 - PspA/IM30 family protein, at 2,111,593 to 2,112,333 _RS10500 Position (kb) 2110 2111Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2109.234 kb on - strand, within A4249_RS10480at 2109.383 kb on + strand, within A4249_RS10480at 2109.488 kb on + strand, within A4249_RS10480at 2109.489 kb on - strand, within A4249_RS10480at 2109.489 kb on - strand, within A4249_RS10480at 2109.727 kb on + strand, within A4249_RS10485at 2109.727 kb on + strand, within A4249_RS10485at 2109.727 kb on + strand, within A4249_RS10485at 2109.727 kb on + strand, within A4249_RS10485at 2109.727 kb on + strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.728 kb on - strand, within A4249_RS10485at 2109.898 kb on + strand, within A4249_RS10485at 2109.898 kb on + strand, within A4249_RS10485at 2109.899 kb on - strand, within A4249_RS10485at 2109.899 kb on - strand, within A4249_RS10485at 2109.899 kb on - strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.959 kb on + strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.960 kb on - strand, within A4249_RS10485at 2109.970 kb on + strand, within A4249_RS10485at 2109.970 kb on + strand, within A4249_RS10485at 2109.970 kb on + strand, within A4249_RS10485at 2109.988 kb on + strand, within A4249_RS10485at 2109.988 kb on + strand, within A4249_RS10485at 2109.988 kb on + strand, within A4249_RS10485at 2109.988 kb on + strand, within A4249_RS10485at 2109.989 kb on - strand, within A4249_RS10485at 2109.989 kb on - strand, within A4249_RS10485at 2109.989 kb on - strand, within A4249_RS10485at 2109.989 kb on - strand, within A4249_RS10485at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.234 kb on + strand, within A4249_RS10490at 2110.235 kb on - strand, within A4249_RS10490at 2110.235 kb on - strand, within A4249_RS10490at 2110.235 kb on - strand, within A4249_RS10490at 2110.235 kb on - strand, within A4249_RS10490at 2110.264 kb on + strand, within A4249_RS10490at 2110.264 kb on + strand, within A4249_RS10490at 2110.264 kb on + strand, within A4249_RS10490at 2110.445 kb on - strand, within A4249_RS10490at 2110.540 kb on + strand, within A4249_RS10490at 2110.540 kb on + strand, within A4249_RS10490at 2110.540 kb on + strand, within A4249_RS10490at 2110.541 kb on - strand, within A4249_RS10490at 2110.765 kb on + strandat 2110.766 kb on - strandat 2110.766 kb on - strandat 2110.766 kb on - strandat 2110.769 kb on + strandat 2110.769 kb on + strandat 2110.769 kb on + strandat 2110.770 kb on - strandat 2110.770 kb on - strandat 2110.889 kb on + strandat 2111.272 kb on - strand, within A4249_RS10495at 2111.272 kb on - strand, within A4249_RS10495at 2111.272 kb on - strand, within A4249_RS10495at 2111.289 kb on + strand, within A4249_RS10495at 2111.289 kb on + strand, within A4249_RS10495at 2111.289 kb on + strand, within A4249_RS10495at 2111.290 kb on - strand, within A4249_RS10495at 2111.448 kb on + strand, within A4249_RS10495at 2111.448 kb on + strand, within A4249_RS10495at 2111.448 kb on + strand, within A4249_RS10495at 2111.448 kb on + strand, within A4249_RS10495at 2111.448 kb on + strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495at 2111.449 kb on - strand, within A4249_RS10495

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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2,109,234 - A4249_RS10480 0.31 +0.6
2,109,383 + A4249_RS10480 0.55 +3.1
2,109,488 + A4249_RS10480 0.72 -0.3
2,109,489 - A4249_RS10480 0.72 +0.3
2,109,489 - A4249_RS10480 0.72 -2.0
2,109,727 + A4249_RS10485 0.14 -0.7
2,109,727 + A4249_RS10485 0.14 -0.7
2,109,727 + A4249_RS10485 0.14 +0.0
2,109,727 + A4249_RS10485 0.14 +0.9
2,109,727 + A4249_RS10485 0.14 -0.1
2,109,728 - A4249_RS10485 0.14 +1.0
2,109,728 - A4249_RS10485 0.14 +0.7
2,109,728 - A4249_RS10485 0.14 -0.3
2,109,728 - A4249_RS10485 0.14 -3.4
2,109,728 - A4249_RS10485 0.14 -0.1
2,109,728 - A4249_RS10485 0.14 -0.1
2,109,728 - A4249_RS10485 0.14 -1.4
2,109,898 + A4249_RS10485 0.55 +0.0
2,109,898 + A4249_RS10485 0.55 +0.5
2,109,899 - A4249_RS10485 0.56 +0.7
2,109,899 - A4249_RS10485 0.56 +0.9
2,109,899 - A4249_RS10485 0.56 +2.9
2,109,959 + A4249_RS10485 0.70 -0.9
2,109,959 + A4249_RS10485 0.70 +0.1
2,109,959 + A4249_RS10485 0.70 -0.4
2,109,959 + A4249_RS10485 0.70 +0.6
2,109,959 + A4249_RS10485 0.70 -0.3
2,109,959 + A4249_RS10485 0.70 -1.3
2,109,959 + A4249_RS10485 0.70 +0.3
2,109,959 + A4249_RS10485 0.70 -1.7
2,109,959 + A4249_RS10485 0.70 +0.7
2,109,960 - A4249_RS10485 0.70 +1.4
2,109,960 - A4249_RS10485 0.70 -0.3
2,109,960 - A4249_RS10485 0.70 -0.6
2,109,960 - A4249_RS10485 0.70 -0.6
2,109,960 - A4249_RS10485 0.70 -0.1
2,109,960 - A4249_RS10485 0.70 -0.9
2,109,960 - A4249_RS10485 0.70 -2.5
2,109,960 - A4249_RS10485 0.70 -0.8
2,109,970 + A4249_RS10485 0.73 -0.6
2,109,970 + A4249_RS10485 0.73 +0.2
2,109,970 + A4249_RS10485 0.73 -0.9
2,109,988 + A4249_RS10485 0.77 -2.5
2,109,988 + A4249_RS10485 0.77 +0.2
2,109,988 + A4249_RS10485 0.77 +1.3
2,109,988 + A4249_RS10485 0.77 -0.2
2,109,989 - A4249_RS10485 0.77 -0.3
2,109,989 - A4249_RS10485 0.77 +1.9
2,109,989 - A4249_RS10485 0.77 -1.7
2,109,989 - A4249_RS10485 0.77 -0.7
2,110,234 + A4249_RS10490 0.19 +1.1
2,110,234 + A4249_RS10490 0.19 -0.8
2,110,234 + A4249_RS10490 0.19 -0.1
2,110,234 + A4249_RS10490 0.19 +2.7
2,110,234 + A4249_RS10490 0.19 +1.3
2,110,234 + A4249_RS10490 0.19 -1.1
2,110,234 + A4249_RS10490 0.19 +0.0
2,110,234 + A4249_RS10490 0.19 +0.3
2,110,235 - A4249_RS10490 0.19 +0.3
2,110,235 - A4249_RS10490 0.19 +0.8
2,110,235 - A4249_RS10490 0.19 +1.3
2,110,235 - A4249_RS10490 0.19 +0.3
2,110,264 + A4249_RS10490 0.24 -0.1
2,110,264 + A4249_RS10490 0.24 +0.3
2,110,264 + A4249_RS10490 0.24 +0.2
2,110,445 - A4249_RS10490 0.52 -1.1
2,110,540 + A4249_RS10490 0.66 +1.0
2,110,540 + A4249_RS10490 0.66 -1.5
2,110,540 + A4249_RS10490 0.66 -1.2
2,110,541 - A4249_RS10490 0.67 -0.5
2,110,765 + -0.4
2,110,766 - +0.3
2,110,766 - +0.5
2,110,766 - -0.8
2,110,769 + +0.3
2,110,769 + +0.8
2,110,769 + +0.9
2,110,770 - +0.2
2,110,770 - +0.5
2,110,889 + +0.1
2,111,272 - A4249_RS10495 0.55 -0.5
2,111,272 - A4249_RS10495 0.55 -0.2
2,111,272 - A4249_RS10495 0.55 -0.2
2,111,289 + A4249_RS10495 0.58 +1.9
2,111,289 + A4249_RS10495 0.58 -0.3
2,111,289 + A4249_RS10495 0.58 +0.7
2,111,290 - A4249_RS10495 0.58 +0.3
2,111,448 + A4249_RS10495 0.81 -0.5
2,111,448 + A4249_RS10495 0.81 -0.3
2,111,448 + A4249_RS10495 0.81 +0.3
2,111,448 + A4249_RS10495 0.81 -0.4
2,111,448 + A4249_RS10495 0.81 -0.6
2,111,449 - A4249_RS10495 0.81 -0.7
2,111,449 - A4249_RS10495 0.81 +0.9
2,111,449 - A4249_RS10495 0.81 -0.7
2,111,449 - A4249_RS10495 0.81 -0.2
2,111,449 - A4249_RS10495 0.81 +1.6
2,111,449 - A4249_RS10495 0.81 -1.7
2,111,449 - A4249_RS10495 0.81 +0.1
2,111,449 - A4249_RS10495 0.81 -0.7

Or see this region's nucleotide sequence