Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10335

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10330 and A4249_RS10335 are separated by 380 nucleotidesA4249_RS10335 and A4249_RS10340 overlap by 4 nucleotidesA4249_RS10340 and A4249_RS10345 are separated by 96 nucleotides A4249_RS10330: A4249_RS10330 - response regulator transcription factor, at 2,073,955 to 2,074,656 _RS10330 A4249_RS10335: A4249_RS10335 - chromosomal replication initiator DnaA, at 2,075,037 to 2,075,393 _RS10335 A4249_RS10340: A4249_RS10340 - DUF6456 domain-containing protein, at 2,075,390 to 2,076,100 _RS10340 A4249_RS10345: A4249_RS10345 - hypothetical protein, at 2,076,197 to 2,076,604 _RS10345 Position (kb) 2075 2076Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2074.657 kb on - strandat 2074.729 kb on - strandat 2074.729 kb on - strandat 2074.780 kb on - strandat 2074.831 kb on + strandat 2074.996 kb on + strandat 2074.996 kb on + strandat 2074.996 kb on + strandat 2074.996 kb on + strandat 2074.996 kb on + strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2074.997 kb on - strandat 2075.049 kb on + strandat 2075.049 kb on + strandat 2075.049 kb on + strandat 2075.049 kb on + strandat 2075.049 kb on + strandat 2075.050 kb on - strandat 2075.050 kb on - strandat 2075.050 kb on - strandat 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.196 kb on + strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.197 kb on - strand, within A4249_RS10335at 2075.214 kb on + strand, within A4249_RS10335at 2075.214 kb on + strand, within A4249_RS10335at 2075.215 kb on - strand, within A4249_RS10335at 2075.361 kb on + strandat 2075.361 kb on + strandat 2075.361 kb on + strandat 2075.362 kb on - strandat 2075.362 kb on - strandat 2075.362 kb on - strandat 2075.362 kb on - strandat 2075.362 kb on - strandat 2075.362 kb on - strandat 2075.362 kb on - strandat 2075.465 kb on + strand, within A4249_RS10340at 2075.465 kb on + strand, within A4249_RS10340at 2075.465 kb on + strand, within A4249_RS10340at 2075.465 kb on + strand, within A4249_RS10340at 2075.466 kb on - strand, within A4249_RS10340at 2075.466 kb on - strand, within A4249_RS10340at 2076.027 kb on + strand, within A4249_RS10340at 2076.086 kb on + strandat 2076.114 kb on + strandat 2076.185 kb on + strandat 2076.185 kb on + strandat 2076.185 kb on + strandat 2076.186 kb on - strandat 2076.186 kb on - strandat 2076.186 kb on - strandat 2076.186 kb on - strandat 2076.186 kb on - strandat 2076.190 kb on + strandat 2076.190 kb on + strandat 2076.190 kb on + strandat 2076.191 kb on - strandat 2076.191 kb on - strandat 2076.191 kb on - strandat 2076.191 kb on - strandat 2076.191 kb on - strandat 2076.196 kb on + strandat 2076.196 kb on + strandat 2076.196 kb on + strandat 2076.197 kb on - strandat 2076.197 kb on - strandat 2076.197 kb on - strandat 2076.197 kb on - strandat 2076.197 kb on - strandat 2076.278 kb on + strand, within A4249_RS10345at 2076.317 kb on + strand, within A4249_RS10345at 2076.318 kb on - strand, within A4249_RS10345at 2076.370 kb on + strand, within A4249_RS10345at 2076.370 kb on + strand, within A4249_RS10345at 2076.371 kb on - strand, within A4249_RS10345

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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2,074,657 - -1.4
2,074,729 - +0.1
2,074,729 - +0.7
2,074,780 - -1.8
2,074,831 + -1.3
2,074,996 + -1.8
2,074,996 + -2.8
2,074,996 + -0.3
2,074,996 + -3.7
2,074,996 + -2.1
2,074,997 - -1.8
2,074,997 - -1.5
2,074,997 - -3.1
2,074,997 - -2.5
2,074,997 - -2.3
2,074,997 - -0.7
2,074,997 - -1.4
2,074,997 - -3.4
2,074,997 - -2.2
2,075,049 + +1.2
2,075,049 + -0.5
2,075,049 + +2.9
2,075,049 + -0.5
2,075,049 + +0.3
2,075,050 - +0.6
2,075,050 - -1.1
2,075,050 - -0.2
2,075,196 + A4249_RS10335 0.45 -0.0
2,075,196 + A4249_RS10335 0.45 +0.7
2,075,196 + A4249_RS10335 0.45 -0.3
2,075,196 + A4249_RS10335 0.45 -1.3
2,075,196 + A4249_RS10335 0.45 +0.1
2,075,196 + A4249_RS10335 0.45 -0.4
2,075,196 + A4249_RS10335 0.45 -0.7
2,075,196 + A4249_RS10335 0.45 -0.1
2,075,196 + A4249_RS10335 0.45 +2.3
2,075,196 + A4249_RS10335 0.45 +1.2
2,075,196 + A4249_RS10335 0.45 -0.7
2,075,196 + A4249_RS10335 0.45 -0.7
2,075,196 + A4249_RS10335 0.45 +0.3
2,075,196 + A4249_RS10335 0.45 -0.2
2,075,196 + A4249_RS10335 0.45 -0.2
2,075,196 + A4249_RS10335 0.45 -0.0
2,075,196 + A4249_RS10335 0.45 -1.1
2,075,196 + A4249_RS10335 0.45 -0.3
2,075,197 - A4249_RS10335 0.45 +0.0
2,075,197 - A4249_RS10335 0.45 +0.3
2,075,197 - A4249_RS10335 0.45 +0.7
2,075,197 - A4249_RS10335 0.45 -0.0
2,075,197 - A4249_RS10335 0.45 +1.3
2,075,197 - A4249_RS10335 0.45 -0.1
2,075,197 - A4249_RS10335 0.45 +2.7
2,075,197 - A4249_RS10335 0.45 -0.3
2,075,197 - A4249_RS10335 0.45 -0.1
2,075,197 - A4249_RS10335 0.45 -0.4
2,075,214 + A4249_RS10335 0.50 -1.3
2,075,214 + A4249_RS10335 0.50 +0.7
2,075,215 - A4249_RS10335 0.50 -0.7
2,075,361 + -0.9
2,075,361 + -1.3
2,075,361 + -1.4
2,075,362 - -0.3
2,075,362 - -1.7
2,075,362 - -0.4
2,075,362 - -1.5
2,075,362 - -0.3
2,075,362 - -0.2
2,075,362 - -0.4
2,075,465 + A4249_RS10340 0.11 +0.3
2,075,465 + A4249_RS10340 0.11 +0.1
2,075,465 + A4249_RS10340 0.11 +1.8
2,075,465 + A4249_RS10340 0.11 +0.6
2,075,466 - A4249_RS10340 0.11 -1.3
2,075,466 - A4249_RS10340 0.11 -0.1
2,076,027 + A4249_RS10340 0.90 +0.9
2,076,086 + +0.3
2,076,114 + -0.3
2,076,185 + -0.9
2,076,185 + -0.5
2,076,185 + +0.5
2,076,186 - +0.9
2,076,186 - +1.3
2,076,186 - -1.3
2,076,186 - -0.0
2,076,186 - -0.5
2,076,190 + -0.8
2,076,190 + +0.5
2,076,190 + +0.2
2,076,191 - -0.9
2,076,191 - +0.6
2,076,191 - -0.3
2,076,191 - +1.9
2,076,191 - +1.1
2,076,196 + +0.7
2,076,196 + -1.7
2,076,196 + +0.2
2,076,197 - -0.8
2,076,197 - -1.6
2,076,197 - +2.8
2,076,197 - +0.7
2,076,197 - -0.5
2,076,278 + A4249_RS10345 0.20 -0.9
2,076,317 + A4249_RS10345 0.29 -0.5
2,076,318 - A4249_RS10345 0.30 +0.2
2,076,370 + A4249_RS10345 0.42 +0.1
2,076,370 + A4249_RS10345 0.42 +0.3
2,076,371 - A4249_RS10345 0.43 -0.1

Or see this region's nucleotide sequence