Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09030

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09025 and A4249_RS09030 are separated by 13 nucleotidesA4249_RS09030 and A4249_RS09035 are separated by 70 nucleotides A4249_RS09025: A4249_RS09025 - PepSY domain-containing protein, at 1,809,281 to 1,810,627 _RS09025 A4249_RS09030: A4249_RS09030 - copper chaperone PCu(A)C, at 1,810,641 to 1,811,132 _RS09030 A4249_RS09035: A4249_RS09035 - redox-regulated ATPase YchF, at 1,811,203 to 1,812,297 _RS09035 Position (kb) 1810 1811 1812Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1809.726 kb on + strand, within A4249_RS09025at 1809.726 kb on + strand, within A4249_RS09025at 1809.727 kb on - strand, within A4249_RS09025at 1809.727 kb on - strand, within A4249_RS09025at 1809.776 kb on + strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.777 kb on - strand, within A4249_RS09025at 1809.881 kb on + strand, within A4249_RS09025at 1809.881 kb on + strand, within A4249_RS09025at 1809.881 kb on + strand, within A4249_RS09025at 1809.881 kb on + strand, within A4249_RS09025at 1809.881 kb on + strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1809.882 kb on - strand, within A4249_RS09025at 1810.151 kb on + strand, within A4249_RS09025at 1810.153 kb on + strand, within A4249_RS09025at 1810.153 kb on + strand, within A4249_RS09025at 1810.153 kb on + strand, within A4249_RS09025at 1810.153 kb on + strand, within A4249_RS09025at 1810.154 kb on - strand, within A4249_RS09025at 1810.187 kb on + strand, within A4249_RS09025at 1810.187 kb on + strand, within A4249_RS09025at 1810.187 kb on + strand, within A4249_RS09025at 1810.187 kb on + strand, within A4249_RS09025at 1810.189 kb on + strand, within A4249_RS09025at 1810.189 kb on + strand, within A4249_RS09025at 1810.189 kb on + strand, within A4249_RS09025at 1810.189 kb on + strand, within A4249_RS09025at 1810.190 kb on - strand, within A4249_RS09025at 1810.190 kb on - strand, within A4249_RS09025at 1810.190 kb on - strand, within A4249_RS09025at 1810.190 kb on - strand, within A4249_RS09025at 1810.190 kb on - strand, within A4249_RS09025at 1810.235 kb on + strand, within A4249_RS09025at 1810.235 kb on + strand, within A4249_RS09025at 1810.235 kb on + strand, within A4249_RS09025at 1810.235 kb on + strand, within A4249_RS09025at 1810.235 kb on + strand, within A4249_RS09025at 1810.235 kb on + strand, within A4249_RS09025at 1810.236 kb on - strand, within A4249_RS09025at 1810.236 kb on - strand, within A4249_RS09025at 1810.236 kb on - strand, within A4249_RS09025at 1810.237 kb on + strand, within A4249_RS09025at 1810.277 kb on + strand, within A4249_RS09025at 1810.278 kb on - strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.322 kb on + strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.323 kb on - strand, within A4249_RS09025at 1810.538 kb on + strandat 1810.539 kb on - strandat 1810.572 kb on + strandat 1810.573 kb on - strandat 1810.590 kb on + strandat 1810.591 kb on - strandat 1810.591 kb on - strandat 1810.591 kb on - strandat 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.809 kb on + strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1810.810 kb on - strand, within A4249_RS09030at 1811.199 kb on + strandat 1811.199 kb on + strandat 1811.199 kb on + strandat 1811.199 kb on + strandat 1811.200 kb on - strandat 1811.200 kb on - strandat 1811.200 kb on - strandat 1811.212 kb on - strandat 1811.299 kb on + strandat 1811.300 kb on - strandat 1811.300 kb on - strandat 1811.300 kb on - strandat 1811.815 kb on + strand, within A4249_RS09035at 1811.816 kb on - strand, within A4249_RS09035at 1812.028 kb on + strand, within A4249_RS09035at 1812.028 kb on + strand, within A4249_RS09035at 1812.053 kb on - strand, within A4249_RS09035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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1,809,726 + A4249_RS09025 0.33 +0.3
1,809,726 + A4249_RS09025 0.33 -0.7
1,809,727 - A4249_RS09025 0.33 +1.1
1,809,727 - A4249_RS09025 0.33 -0.3
1,809,776 + A4249_RS09025 0.37 +1.4
1,809,777 - A4249_RS09025 0.37 +0.8
1,809,777 - A4249_RS09025 0.37 +0.9
1,809,777 - A4249_RS09025 0.37 -0.5
1,809,777 - A4249_RS09025 0.37 -0.3
1,809,777 - A4249_RS09025 0.37 +0.3
1,809,777 - A4249_RS09025 0.37 +0.9
1,809,777 - A4249_RS09025 0.37 +0.1
1,809,881 + A4249_RS09025 0.45 +0.1
1,809,881 + A4249_RS09025 0.45 +0.2
1,809,881 + A4249_RS09025 0.45 +0.3
1,809,881 + A4249_RS09025 0.45 +0.5
1,809,881 + A4249_RS09025 0.45 +0.4
1,809,882 - A4249_RS09025 0.45 -0.1
1,809,882 - A4249_RS09025 0.45 +0.6
1,809,882 - A4249_RS09025 0.45 -0.1
1,809,882 - A4249_RS09025 0.45 -0.1
1,809,882 - A4249_RS09025 0.45 -0.7
1,809,882 - A4249_RS09025 0.45 -0.5
1,809,882 - A4249_RS09025 0.45 +0.6
1,809,882 - A4249_RS09025 0.45 -0.6
1,809,882 - A4249_RS09025 0.45 +0.3
1,809,882 - A4249_RS09025 0.45 +0.3
1,810,151 + A4249_RS09025 0.65 +0.2
1,810,153 + A4249_RS09025 0.65 +0.3
1,810,153 + A4249_RS09025 0.65 +0.1
1,810,153 + A4249_RS09025 0.65 +0.1
1,810,153 + A4249_RS09025 0.65 +0.7
1,810,154 - A4249_RS09025 0.65 -0.3
1,810,187 + A4249_RS09025 0.67 +1.1
1,810,187 + A4249_RS09025 0.67 -0.1
1,810,187 + A4249_RS09025 0.67 -0.1
1,810,187 + A4249_RS09025 0.67 -0.0
1,810,189 + A4249_RS09025 0.67 +0.3
1,810,189 + A4249_RS09025 0.67 +0.3
1,810,189 + A4249_RS09025 0.67 +0.6
1,810,189 + A4249_RS09025 0.67 +0.4
1,810,190 - A4249_RS09025 0.67 +0.8
1,810,190 - A4249_RS09025 0.67 +1.2
1,810,190 - A4249_RS09025 0.67 -0.0
1,810,190 - A4249_RS09025 0.67 +0.0
1,810,190 - A4249_RS09025 0.67 +0.2
1,810,235 + A4249_RS09025 0.71 -0.4
1,810,235 + A4249_RS09025 0.71 +0.1
1,810,235 + A4249_RS09025 0.71 -0.4
1,810,235 + A4249_RS09025 0.71 -0.1
1,810,235 + A4249_RS09025 0.71 +0.2
1,810,235 + A4249_RS09025 0.71 -0.2
1,810,236 - A4249_RS09025 0.71 +0.7
1,810,236 - A4249_RS09025 0.71 +0.4
1,810,236 - A4249_RS09025 0.71 +0.1
1,810,237 + A4249_RS09025 0.71 -0.2
1,810,277 + A4249_RS09025 0.74 -0.2
1,810,278 - A4249_RS09025 0.74 +0.4
1,810,322 + A4249_RS09025 0.77 +0.5
1,810,322 + A4249_RS09025 0.77 -0.1
1,810,322 + A4249_RS09025 0.77 -0.2
1,810,322 + A4249_RS09025 0.77 +0.4
1,810,322 + A4249_RS09025 0.77 +0.2
1,810,322 + A4249_RS09025 0.77 +0.6
1,810,322 + A4249_RS09025 0.77 +0.7
1,810,322 + A4249_RS09025 0.77 -1.1
1,810,322 + A4249_RS09025 0.77 +0.1
1,810,323 - A4249_RS09025 0.77 +0.5
1,810,323 - A4249_RS09025 0.77 +0.2
1,810,323 - A4249_RS09025 0.77 +0.6
1,810,323 - A4249_RS09025 0.77 -0.1
1,810,323 - A4249_RS09025 0.77 -0.3
1,810,323 - A4249_RS09025 0.77 +0.1
1,810,323 - A4249_RS09025 0.77 -0.1
1,810,323 - A4249_RS09025 0.77 +0.5
1,810,323 - A4249_RS09025 0.77 +0.1
1,810,323 - A4249_RS09025 0.77 +1.3
1,810,323 - A4249_RS09025 0.77 +0.2
1,810,538 + +0.3
1,810,539 - -0.1
1,810,572 + -0.6
1,810,573 - +0.2
1,810,590 + +0.3
1,810,591 - -0.6
1,810,591 - -0.9
1,810,591 - -0.5
1,810,809 + A4249_RS09030 0.34 +1.6
1,810,809 + A4249_RS09030 0.34 +0.5
1,810,809 + A4249_RS09030 0.34 +0.9
1,810,809 + A4249_RS09030 0.34 +0.1
1,810,809 + A4249_RS09030 0.34 -1.2
1,810,809 + A4249_RS09030 0.34 -2.9
1,810,809 + A4249_RS09030 0.34 +0.4
1,810,809 + A4249_RS09030 0.34 -0.5
1,810,810 - A4249_RS09030 0.34 +0.6
1,810,810 - A4249_RS09030 0.34 +0.2
1,810,810 - A4249_RS09030 0.34 -1.0
1,810,810 - A4249_RS09030 0.34 -0.2
1,810,810 - A4249_RS09030 0.34 +0.4
1,810,810 - A4249_RS09030 0.34 -1.2
1,810,810 - A4249_RS09030 0.34 -2.0
1,810,810 - A4249_RS09030 0.34 +1.3
1,810,810 - A4249_RS09030 0.34 -0.2
1,810,810 - A4249_RS09030 0.34 -1.3
1,810,810 - A4249_RS09030 0.34 +0.2
1,810,810 - A4249_RS09030 0.34 +0.6
1,810,810 - A4249_RS09030 0.34 +0.2
1,811,199 + -0.5
1,811,199 + +1.3
1,811,199 + -0.9
1,811,199 + +1.9
1,811,200 - -1.3
1,811,200 - -1.3
1,811,200 - +1.3
1,811,212 - -0.3
1,811,299 + +1.3
1,811,300 - -2.7
1,811,300 - +1.3
1,811,300 - -1.5
1,811,815 + A4249_RS09035 0.56 -2.9
1,811,816 - A4249_RS09035 0.56 -2.4
1,812,028 + A4249_RS09035 0.75 -1.3
1,812,028 + A4249_RS09035 0.75 -0.7
1,812,053 - A4249_RS09035 0.78 +0.3

Or see this region's nucleotide sequence