Experiment: D-Glucose (C); 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS06005 and A4249_RS06010 overlap by 1 nucleotides A4249_RS06010 and A4249_RS06015 overlap by 4 nucleotides A4249_RS06015 and A4249_RS06020 overlap by 4 nucleotides A4249_RS06020 and A4249_RS06025 overlap by 1 nucleotides A4249_RS06025 and A4249_RS06030 are separated by 66 nucleotides
A4249_RS06005: A4249_RS06005 - thiamine-phosphate kinase, at 1,223,832 to 1,224,821
_RS06005
A4249_RS06010: A4249_RS06010 - transcription antitermination factor NusB, at 1,224,821 to 1,225,345
_RS06010
A4249_RS06015: A4249_RS06015 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,225,342 to 1,225,803
_RS06015
A4249_RS06020: A4249_RS06020 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,225,800 to 1,226,933
_RS06020
A4249_RS06025: A4249_RS06025 - riboflavin synthase, at 1,226,933 to 1,227,535
_RS06025
A4249_RS06030: A4249_RS06030 - RibD family protein, at 1,227,602 to 1,228,222
_RS06030
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1224.822 kb on + strand at 1224.822 kb on + strand at 1224.822 kb on + strand at 1224.822 kb on + strand at 1224.822 kb on + strand at 1224.822 kb on + strand at 1224.823 kb on - strand at 1224.823 kb on - strand at 1224.823 kb on - strand at 1224.823 kb on - strand at 1224.823 kb on - strand at 1224.823 kb on - strand at 1224.843 kb on - strand at 1224.843 kb on - strand at 1225.810 kb on - strand at 1227.564 kb on + strand at 1227.565 kb on - strand at 1227.565 kb on - strand at 1227.571 kb on + strand at 1227.572 kb on - strand at 1227.572 kb on - strand at 1227.580 kb on + strand at 1227.580 kb on + strand at 1227.580 kb on + strand at 1227.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C); 20C remove 1,224,822 + -1.6 1,224,822 + +0.4 1,224,822 + +0.2 1,224,822 + -1.3 1,224,822 + +0.2 1,224,822 + -0.3 1,224,823 - -0.9 1,224,823 - +1.2 1,224,823 - -1.8 1,224,823 - +0.2 1,224,823 - +1.4 1,224,823 - +0.6 1,224,843 - +0.3 1,224,843 - -0.4 1,225,810 - -1.8 1,227,564 + -0.7 1,227,565 - +1.5 1,227,565 - +0.2 1,227,571 + -3.2 1,227,572 - +0.3 1,227,572 - +0.8 1,227,580 + +1.7 1,227,580 + +0.1 1,227,580 + -0.7 1,227,581 - +0.4
Or see this region's nucleotide sequence