Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05650

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05645 and A4249_RS05650 overlap by 4 nucleotidesA4249_RS05650 and A4249_RS05655 are separated by 110 nucleotidesA4249_RS05655 and A4249_RS05660 are separated by 23 nucleotidesA4249_RS05660 and A4249_RS05665 overlap by 4 nucleotides A4249_RS05645: A4249_RS05645 - MFS transporter, at 1,155,949 to 1,157,346 _RS05645 A4249_RS05650: A4249_RS05650 - ribonuclease HI, at 1,157,343 to 1,157,795 _RS05650 A4249_RS05655: A4249_RS05655 - twin-arginine translocase TatA/TatE family subunit, at 1,157,906 to 1,158,124 _RS05655 A4249_RS05660: A4249_RS05660 - Sec-independent protein translocase protein TatB, at 1,158,148 to 1,158,726 _RS05660 A4249_RS05665: A4249_RS05665 - twin-arginine translocase subunit TatC, at 1,158,723 to 1,159,613 _RS05665 Position (kb) 1157 1158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1156.348 kb on + strand, within A4249_RS05645at 1156.354 kb on + strand, within A4249_RS05645at 1156.354 kb on + strand, within A4249_RS05645at 1156.354 kb on + strand, within A4249_RS05645at 1156.354 kb on + strand, within A4249_RS05645at 1156.354 kb on + strand, within A4249_RS05645at 1156.355 kb on - strand, within A4249_RS05645at 1156.355 kb on - strand, within A4249_RS05645at 1156.355 kb on - strand, within A4249_RS05645at 1156.443 kb on + strand, within A4249_RS05645at 1156.444 kb on - strand, within A4249_RS05645at 1156.444 kb on - strand, within A4249_RS05645at 1156.453 kb on - strand, within A4249_RS05645at 1156.485 kb on + strand, within A4249_RS05645at 1156.485 kb on + strand, within A4249_RS05645at 1156.485 kb on + strand, within A4249_RS05645at 1156.485 kb on + strand, within A4249_RS05645at 1156.485 kb on + strand, within A4249_RS05645at 1156.485 kb on + strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.486 kb on - strand, within A4249_RS05645at 1156.487 kb on + strand, within A4249_RS05645at 1156.487 kb on + strand, within A4249_RS05645at 1156.487 kb on + strand, within A4249_RS05645at 1156.487 kb on + strand, within A4249_RS05645at 1156.487 kb on + strand, within A4249_RS05645at 1156.487 kb on + strand, within A4249_RS05645at 1156.488 kb on - strand, within A4249_RS05645at 1156.488 kb on - strand, within A4249_RS05645at 1156.488 kb on - strand, within A4249_RS05645at 1156.582 kb on - strand, within A4249_RS05645at 1156.582 kb on - strand, within A4249_RS05645at 1156.731 kb on - strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.787 kb on + strand, within A4249_RS05645at 1156.854 kb on + strand, within A4249_RS05645at 1156.855 kb on - strand, within A4249_RS05645at 1156.943 kb on - strand, within A4249_RS05645at 1157.345 kb on - strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.844 kb on + strandat 1157.844 kb on + strandat 1157.844 kb on + strandat 1157.844 kb on + strandat 1157.846 kb on + strandat 1157.846 kb on + strandat 1157.846 kb on + strandat 1158.135 kb on + strandat 1158.135 kb on + strandat 1158.135 kb on + strandat 1158.135 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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1,156,348 + A4249_RS05645 0.29 -2.4
1,156,354 + A4249_RS05645 0.29 -1.0
1,156,354 + A4249_RS05645 0.29 -0.8
1,156,354 + A4249_RS05645 0.29 -0.8
1,156,354 + A4249_RS05645 0.29 -0.2
1,156,354 + A4249_RS05645 0.29 +1.2
1,156,355 - A4249_RS05645 0.29 +0.2
1,156,355 - A4249_RS05645 0.29 +2.1
1,156,355 - A4249_RS05645 0.29 +0.2
1,156,443 + A4249_RS05645 0.35 -0.8
1,156,444 - A4249_RS05645 0.35 -0.1
1,156,444 - A4249_RS05645 0.35 -0.3
1,156,453 - A4249_RS05645 0.36 -0.2
1,156,485 + A4249_RS05645 0.38 -0.4
1,156,485 + A4249_RS05645 0.38 +0.2
1,156,485 + A4249_RS05645 0.38 +0.7
1,156,485 + A4249_RS05645 0.38 -3.9
1,156,485 + A4249_RS05645 0.38 +0.5
1,156,485 + A4249_RS05645 0.38 +1.0
1,156,486 - A4249_RS05645 0.38 -0.8
1,156,486 - A4249_RS05645 0.38 +0.8
1,156,486 - A4249_RS05645 0.38 -2.4
1,156,486 - A4249_RS05645 0.38 +0.2
1,156,486 - A4249_RS05645 0.38 +0.3
1,156,486 - A4249_RS05645 0.38 -0.8
1,156,486 - A4249_RS05645 0.38 -0.4
1,156,486 - A4249_RS05645 0.38 -0.5
1,156,486 - A4249_RS05645 0.38 +0.3
1,156,486 - A4249_RS05645 0.38 +0.1
1,156,487 + A4249_RS05645 0.38 -0.8
1,156,487 + A4249_RS05645 0.38 +2.6
1,156,487 + A4249_RS05645 0.38 -2.1
1,156,487 + A4249_RS05645 0.38 +1.8
1,156,487 + A4249_RS05645 0.38 -1.5
1,156,487 + A4249_RS05645 0.38 +0.2
1,156,488 - A4249_RS05645 0.39 +0.2
1,156,488 - A4249_RS05645 0.39 +0.8
1,156,488 - A4249_RS05645 0.39 +1.8
1,156,582 - A4249_RS05645 0.45 +0.6
1,156,582 - A4249_RS05645 0.45 +0.2
1,156,731 - A4249_RS05645 0.56 +0.3
1,156,787 + A4249_RS05645 0.60 +0.5
1,156,787 + A4249_RS05645 0.60 +0.6
1,156,787 + A4249_RS05645 0.60 +0.2
1,156,787 + A4249_RS05645 0.60 -0.2
1,156,787 + A4249_RS05645 0.60 -0.4
1,156,787 + A4249_RS05645 0.60 +0.3
1,156,787 + A4249_RS05645 0.60 +0.8
1,156,854 + A4249_RS05645 0.65 -0.5
1,156,855 - A4249_RS05645 0.65 +0.5
1,156,943 - A4249_RS05645 0.71 -1.4
1,157,345 - -0.1
1,157,809 + +2.8
1,157,809 + -0.8
1,157,809 + -0.3
1,157,809 + -1.4
1,157,809 + +0.0
1,157,810 - -0.8
1,157,810 - +1.8
1,157,810 - -0.7
1,157,810 - -0.0
1,157,810 - +0.1
1,157,844 + +0.4
1,157,844 + -0.2
1,157,844 + -0.2
1,157,844 + -0.6
1,157,846 + +1.6
1,157,846 + +0.4
1,157,846 + -1.8
1,158,135 + +0.2
1,158,135 + +1.2
1,158,135 + +0.2
1,158,135 + +0.4

Or see this region's nucleotide sequence