Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05085

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05080 and A4249_RS05085 are separated by 60 nucleotidesA4249_RS05085 and A4249_RS05090 are separated by 201 nucleotidesA4249_RS05090 and A4249_RS05095 are separated by 122 nucleotidesA4249_RS05095 and A4249_RS05100 are separated by 68 nucleotides A4249_RS05080: A4249_RS05080 - ketol-acid reductoisomerase, at 1,048,027 to 1,049,061 _RS05080 A4249_RS05085: A4249_RS05085 - tRNA-Pro, at 1,049,122 to 1,049,198 _RS05085 A4249_RS05090: A4249_RS05090 - tRNA-Gln, at 1,049,400 to 1,049,473 _RS05090 A4249_RS05095: A4249_RS05095 - DNA starvation/stationary phase protection protein, at 1,049,596 to 1,050,114 _RS05095 A4249_RS05100: A4249_RS05100 - hypothetical protein, at 1,050,183 to 1,050,545 _RS05100 Position (kb) 1049 1050Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1049.106 kb on + strandat 1049.107 kb on - strandat 1049.310 kb on + strandat 1049.311 kb on - strandat 1049.508 kb on + strandat 1049.509 kb on - strandat 1049.509 kb on - strandat 1049.522 kb on + strandat 1049.522 kb on + strandat 1049.522 kb on + strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.523 kb on - strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.563 kb on + strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.564 kb on - strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.579 kb on + strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.580 kb on - strandat 1049.719 kb on + strand, within A4249_RS05095at 1049.719 kb on + strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.720 kb on - strand, within A4249_RS05095at 1049.773 kb on + strand, within A4249_RS05095at 1049.773 kb on + strand, within A4249_RS05095at 1049.773 kb on + strand, within A4249_RS05095at 1049.774 kb on - strand, within A4249_RS05095at 1049.872 kb on - strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.920 kb on + strand, within A4249_RS05095at 1049.921 kb on - strand, within A4249_RS05095at 1049.921 kb on - strand, within A4249_RS05095at 1049.937 kb on + strand, within A4249_RS05095at 1049.937 kb on + strand, within A4249_RS05095at 1049.937 kb on + strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.016 kb on - strand, within A4249_RS05095at 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.139 kb on + strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.140 kb on - strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.143 kb on + strandat 1050.144 kb on - strandat 1050.144 kb on - strandat 1050.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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1,049,106 + +0.2
1,049,107 - -0.2
1,049,310 + -0.6
1,049,311 - +0.1
1,049,508 + -0.8
1,049,509 - -1.5
1,049,509 - -0.9
1,049,522 + +0.2
1,049,522 + -0.1
1,049,522 + -1.3
1,049,523 - +0.2
1,049,523 - +1.4
1,049,523 - +1.6
1,049,523 - +1.8
1,049,523 - +0.2
1,049,523 - +1.2
1,049,563 + +0.2
1,049,563 + -0.7
1,049,563 + +0.1
1,049,563 + +0.4
1,049,563 + -0.7
1,049,563 + +0.2
1,049,564 - -0.8
1,049,564 - -0.8
1,049,564 - -0.2
1,049,564 - +1.2
1,049,564 - -0.1
1,049,564 - +1.1
1,049,564 - -0.3
1,049,564 - +0.2
1,049,564 - -0.1
1,049,564 - +0.1
1,049,579 + -0.0
1,049,579 + -0.3
1,049,579 + +1.6
1,049,579 + +1.0
1,049,579 + -1.4
1,049,579 + +1.0
1,049,579 + -0.6
1,049,579 + +0.7
1,049,579 + +0.2
1,049,580 - -0.3
1,049,580 - +0.4
1,049,580 - -0.2
1,049,580 - +1.2
1,049,580 - +1.8
1,049,580 - +0.8
1,049,580 - +0.1
1,049,580 - +0.2
1,049,719 + A4249_RS05095 0.24 -0.6
1,049,719 + A4249_RS05095 0.24 -0.4
1,049,720 - A4249_RS05095 0.24 -1.8
1,049,720 - A4249_RS05095 0.24 -0.6
1,049,720 - A4249_RS05095 0.24 +1.0
1,049,720 - A4249_RS05095 0.24 +0.1
1,049,720 - A4249_RS05095 0.24 +1.3
1,049,720 - A4249_RS05095 0.24 +1.0
1,049,773 + A4249_RS05095 0.34 -0.5
1,049,773 + A4249_RS05095 0.34 +0.8
1,049,773 + A4249_RS05095 0.34 +0.4
1,049,774 - A4249_RS05095 0.34 +1.2
1,049,872 - A4249_RS05095 0.53 -0.7
1,049,920 + A4249_RS05095 0.62 +0.1
1,049,920 + A4249_RS05095 0.62 +0.5
1,049,920 + A4249_RS05095 0.62 +0.3
1,049,920 + A4249_RS05095 0.62 -0.3
1,049,920 + A4249_RS05095 0.62 +0.3
1,049,921 - A4249_RS05095 0.63 +1.8
1,049,921 - A4249_RS05095 0.63 -0.5
1,049,937 + A4249_RS05095 0.66 -0.4
1,049,937 + A4249_RS05095 0.66 +0.9
1,049,937 + A4249_RS05095 0.66 -0.0
1,050,016 - A4249_RS05095 0.81 -3.1
1,050,016 - A4249_RS05095 0.81 +0.9
1,050,016 - A4249_RS05095 0.81 +2.2
1,050,016 - A4249_RS05095 0.81 +0.8
1,050,139 + +0.7
1,050,139 + -1.4
1,050,139 + +0.2
1,050,139 + +0.1
1,050,139 + -0.9
1,050,139 + -0.4
1,050,139 + -0.8
1,050,139 + -0.6
1,050,139 + +0.2
1,050,139 + -1.0
1,050,139 + +0.5
1,050,139 + -0.4
1,050,139 + -0.0
1,050,139 + -0.6
1,050,140 - +0.1
1,050,140 - -0.8
1,050,140 - +1.0
1,050,140 - -1.4
1,050,140 - -0.4
1,050,140 - -1.4
1,050,140 - -0.4
1,050,140 - +1.0
1,050,140 - -0.5
1,050,140 - -1.2
1,050,140 - +0.2
1,050,140 - -0.6
1,050,140 - -0.6
1,050,140 - -0.7
1,050,140 - -3.4
1,050,143 + -0.5
1,050,143 + +0.1
1,050,143 + -0.2
1,050,143 + -0.3
1,050,143 + +0.0
1,050,144 - -0.4
1,050,144 - +0.3
1,050,144 - +0.3

Or see this region's nucleotide sequence