Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04660

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04655 and A4249_RS04660 are separated by 104 nucleotidesA4249_RS04660 and A4249_RS04665 are separated by 36 nucleotides A4249_RS04655: A4249_RS04655 - peptidoglycan DD-metalloendopeptidase family protein, at 967,701 to 968,780 _RS04655 A4249_RS04660: A4249_RS04660 - preprotein translocase subunit YajC, at 968,885 to 969,196 _RS04660 A4249_RS04665: A4249_RS04665 - protein translocase subunit SecD, at 969,233 to 970,825 _RS04665 Position (kb) 968 969 970Strain fitness (log2 ratio) -2 -1 0 1 2at 967.891 kb on - strand, within A4249_RS04655at 967.905 kb on + strand, within A4249_RS04655at 967.905 kb on + strand, within A4249_RS04655at 967.998 kb on + strand, within A4249_RS04655at 967.998 kb on + strand, within A4249_RS04655at 967.999 kb on - strand, within A4249_RS04655at 967.999 kb on - strand, within A4249_RS04655at 968.028 kb on + strand, within A4249_RS04655at 968.028 kb on + strand, within A4249_RS04655at 968.030 kb on + strand, within A4249_RS04655at 968.031 kb on - strand, within A4249_RS04655at 968.044 kb on - strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.082 kb on + strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.083 kb on - strand, within A4249_RS04655at 968.084 kb on + strand, within A4249_RS04655at 968.084 kb on + strand, within A4249_RS04655at 968.084 kb on + strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.085 kb on - strand, within A4249_RS04655at 968.245 kb on - strand, within A4249_RS04655at 968.532 kb on + strand, within A4249_RS04655at 968.532 kb on + strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.533 kb on - strand, within A4249_RS04655at 968.604 kb on + strand, within A4249_RS04655at 968.604 kb on + strand, within A4249_RS04655at 968.604 kb on + strand, within A4249_RS04655at 968.674 kb on + strandat 968.674 kb on + strandat 968.674 kb on + strandat 968.675 kb on - strandat 968.675 kb on - strandat 968.778 kb on + strandat 968.778 kb on + strandat 968.779 kb on - strandat 968.779 kb on - strandat 968.779 kb on - strandat 969.197 kb on + strandat 969.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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967,891 - A4249_RS04655 0.18 -0.5
967,905 + A4249_RS04655 0.19 +0.2
967,905 + A4249_RS04655 0.19 +0.2
967,998 + A4249_RS04655 0.28 +0.2
967,998 + A4249_RS04655 0.28 +1.0
967,999 - A4249_RS04655 0.28 -0.1
967,999 - A4249_RS04655 0.28 -0.3
968,028 + A4249_RS04655 0.30 -0.8
968,028 + A4249_RS04655 0.30 +0.3
968,030 + A4249_RS04655 0.30 +0.2
968,031 - A4249_RS04655 0.31 +0.4
968,044 - A4249_RS04655 0.32 -1.8
968,082 + A4249_RS04655 0.35 -0.2
968,082 + A4249_RS04655 0.35 -0.2
968,082 + A4249_RS04655 0.35 -2.1
968,082 + A4249_RS04655 0.35 +1.2
968,083 - A4249_RS04655 0.35 +0.6
968,083 - A4249_RS04655 0.35 +0.2
968,083 - A4249_RS04655 0.35 -0.2
968,083 - A4249_RS04655 0.35 -1.8
968,084 + A4249_RS04655 0.35 +0.1
968,084 + A4249_RS04655 0.35 +1.8
968,084 + A4249_RS04655 0.35 -0.8
968,085 - A4249_RS04655 0.36 -1.3
968,085 - A4249_RS04655 0.36 -0.8
968,085 - A4249_RS04655 0.36 -0.8
968,085 - A4249_RS04655 0.36 +0.0
968,245 - A4249_RS04655 0.50 +0.8
968,532 + A4249_RS04655 0.77 +1.2
968,532 + A4249_RS04655 0.77 -1.1
968,533 - A4249_RS04655 0.77 +0.7
968,533 - A4249_RS04655 0.77 -0.7
968,533 - A4249_RS04655 0.77 -0.2
968,533 - A4249_RS04655 0.77 -2.1
968,604 + A4249_RS04655 0.84 +0.2
968,604 + A4249_RS04655 0.84 -0.5
968,604 + A4249_RS04655 0.84 -0.1
968,674 + +1.6
968,674 + -1.9
968,674 + -0.8
968,675 - -0.2
968,675 - -1.6
968,778 + -0.7
968,778 + -0.1
968,779 - -0.2
968,779 - -0.7
968,779 - +1.2
969,197 + -1.3
969,217 + +1.8

Or see this region's nucleotide sequence