Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02275

Experiment: D-Glucose (C); 20C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS02270 and A4249_RS02275 are separated by 316 nucleotidesA4249_RS02275 and A4249_RS02280 are separated by 127 nucleotides A4249_RS02270: A4249_RS02270 - isoleucine--tRNA ligase, at 476,360 to 479,350 _RS02270 A4249_RS02275: A4249_RS02275 - hypothetical protein, at 479,667 to 480,569 _RS02275 A4249_RS02280: A4249_RS02280 - insulinase family protein, at 480,697 to 483,582 _RS02280 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 479.376 kb on - strandat 479.376 kb on - strandat 479.529 kb on - strandat 479.529 kb on - strandat 479.645 kb on - strandat 479.967 kb on + strand, within A4249_RS02275at 479.967 kb on + strand, within A4249_RS02275at 479.968 kb on - strand, within A4249_RS02275at 479.968 kb on - strand, within A4249_RS02275at 479.968 kb on - strand, within A4249_RS02275at 480.027 kb on + strand, within A4249_RS02275at 480.027 kb on + strand, within A4249_RS02275at 480.027 kb on + strand, within A4249_RS02275at 480.028 kb on - strand, within A4249_RS02275at 480.028 kb on - strand, within A4249_RS02275at 480.028 kb on - strand, within A4249_RS02275at 480.028 kb on - strand, within A4249_RS02275at 480.028 kb on - strand, within A4249_RS02275at 480.028 kb on - strand, within A4249_RS02275at 480.111 kb on + strand, within A4249_RS02275at 480.112 kb on - strand, within A4249_RS02275at 480.112 kb on - strand, within A4249_RS02275at 480.112 kb on - strand, within A4249_RS02275at 480.112 kb on - strand, within A4249_RS02275at 480.243 kb on + strand, within A4249_RS02275at 480.243 kb on + strand, within A4249_RS02275at 480.288 kb on + strand, within A4249_RS02275at 480.288 kb on + strand, within A4249_RS02275at 480.289 kb on - strand, within A4249_RS02275at 480.289 kb on - strand, within A4249_RS02275at 480.289 kb on - strand, within A4249_RS02275at 480.289 kb on - strand, within A4249_RS02275at 480.289 kb on - strand, within A4249_RS02275at 480.289 kb on - strand, within A4249_RS02275at 480.355 kb on - strand, within A4249_RS02275at 480.432 kb on + strand, within A4249_RS02275at 480.462 kb on + strand, within A4249_RS02275at 480.462 kb on + strand, within A4249_RS02275at 480.462 kb on + strand, within A4249_RS02275at 480.462 kb on + strand, within A4249_RS02275at 480.463 kb on - strand, within A4249_RS02275at 480.463 kb on - strand, within A4249_RS02275at 480.463 kb on - strand, within A4249_RS02275at 480.463 kb on - strand, within A4249_RS02275at 480.463 kb on - strand, within A4249_RS02275at 480.463 kb on - strand, within A4249_RS02275at 480.477 kb on + strand, within A4249_RS02275at 480.477 kb on + strand, within A4249_RS02275at 480.477 kb on + strand, within A4249_RS02275at 480.477 kb on + strand, within A4249_RS02275at 480.477 kb on + strand, within A4249_RS02275at 480.478 kb on - strand, within A4249_RS02275at 480.478 kb on - strand, within A4249_RS02275at 480.486 kb on + strandat 480.578 kb on + strandat 480.578 kb on + strandat 480.578 kb on + strandat 480.578 kb on + strandat 480.579 kb on - strandat 480.579 kb on - strandat 480.579 kb on - strandat 480.579 kb on - strandat 480.579 kb on - strandat 480.579 kb on - strandat 480.579 kb on - strandat 480.619 kb on + strandat 480.619 kb on + strandat 480.620 kb on - strandat 480.620 kb on - strandat 480.699 kb on - strandat 480.755 kb on + strandat 480.755 kb on + strandat 480.755 kb on + strandat 480.755 kb on + strandat 480.755 kb on + strandat 480.875 kb on + strandat 481.058 kb on + strand, within A4249_RS02280at 481.058 kb on + strand, within A4249_RS02280at 481.059 kb on - strand, within A4249_RS02280at 481.094 kb on + strand, within A4249_RS02280at 481.094 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.250 kb on + strand, within A4249_RS02280at 481.251 kb on - strand, within A4249_RS02280at 481.251 kb on - strand, within A4249_RS02280at 481.251 kb on - strand, within A4249_RS02280at 481.251 kb on - strand, within A4249_RS02280at 481.251 kb on - strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.252 kb on + strand, within A4249_RS02280at 481.253 kb on - strand, within A4249_RS02280at 481.253 kb on - strand, within A4249_RS02280at 481.253 kb on - strand, within A4249_RS02280at 481.253 kb on - strand, within A4249_RS02280at 481.253 kb on - strand, within A4249_RS02280at 481.253 kb on - strand, within A4249_RS02280at 481.266 kb on + strand, within A4249_RS02280at 481.266 kb on + strand, within A4249_RS02280at 481.267 kb on - strand, within A4249_RS02280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
remove
479,376 - -0.8
479,376 - +1.3
479,529 - -1.5
479,529 - +0.1
479,645 - +0.3
479,967 + A4249_RS02275 0.33 +2.0
479,967 + A4249_RS02275 0.33 +0.5
479,968 - A4249_RS02275 0.33 -2.3
479,968 - A4249_RS02275 0.33 +0.6
479,968 - A4249_RS02275 0.33 +0.3
480,027 + A4249_RS02275 0.40 +0.3
480,027 + A4249_RS02275 0.40 +0.3
480,027 + A4249_RS02275 0.40 -0.7
480,028 - A4249_RS02275 0.40 -0.1
480,028 - A4249_RS02275 0.40 +1.1
480,028 - A4249_RS02275 0.40 +0.3
480,028 - A4249_RS02275 0.40 +0.6
480,028 - A4249_RS02275 0.40 +1.5
480,028 - A4249_RS02275 0.40 -0.2
480,111 + A4249_RS02275 0.49 -0.1
480,112 - A4249_RS02275 0.49 +0.3
480,112 - A4249_RS02275 0.49 +1.3
480,112 - A4249_RS02275 0.49 +0.0
480,112 - A4249_RS02275 0.49 +1.3
480,243 + A4249_RS02275 0.64 +1.5
480,243 + A4249_RS02275 0.64 +0.0
480,288 + A4249_RS02275 0.69 +0.3
480,288 + A4249_RS02275 0.69 -0.2
480,289 - A4249_RS02275 0.69 -0.6
480,289 - A4249_RS02275 0.69 -1.6
480,289 - A4249_RS02275 0.69 -2.3
480,289 - A4249_RS02275 0.69 -0.6
480,289 - A4249_RS02275 0.69 -1.0
480,289 - A4249_RS02275 0.69 -1.0
480,355 - A4249_RS02275 0.76 -0.2
480,432 + A4249_RS02275 0.85 -1.9
480,462 + A4249_RS02275 0.88 +0.2
480,462 + A4249_RS02275 0.88 +0.4
480,462 + A4249_RS02275 0.88 -0.8
480,462 + A4249_RS02275 0.88 -0.3
480,463 - A4249_RS02275 0.88 +0.7
480,463 - A4249_RS02275 0.88 -0.1
480,463 - A4249_RS02275 0.88 +0.0
480,463 - A4249_RS02275 0.88 +0.3
480,463 - A4249_RS02275 0.88 -1.7
480,463 - A4249_RS02275 0.88 +0.7
480,477 + A4249_RS02275 0.90 -0.1
480,477 + A4249_RS02275 0.90 +0.6
480,477 + A4249_RS02275 0.90 +0.7
480,477 + A4249_RS02275 0.90 +0.2
480,477 + A4249_RS02275 0.90 -0.0
480,478 - A4249_RS02275 0.90 +0.3
480,478 - A4249_RS02275 0.90 -0.3
480,486 + -3.5
480,578 + -0.3
480,578 + -1.0
480,578 + +0.1
480,578 + +0.1
480,579 - -1.7
480,579 - +0.3
480,579 - -0.1
480,579 - -1.2
480,579 - -1.3
480,579 - -1.3
480,579 - +0.5
480,619 + -0.2
480,619 + -2.7
480,620 - +0.2
480,620 - -0.7
480,699 - +0.9
480,755 + +0.1
480,755 + -1.3
480,755 + +0.1
480,755 + +0.6
480,755 + +0.2
480,875 + -2.1
481,058 + A4249_RS02280 0.13 +0.2
481,058 + A4249_RS02280 0.13 -0.6
481,059 - A4249_RS02280 0.13 -0.1
481,094 + A4249_RS02280 0.14 -0.9
481,094 + A4249_RS02280 0.14 -0.8
481,250 + A4249_RS02280 0.19 +0.6
481,250 + A4249_RS02280 0.19 -0.3
481,250 + A4249_RS02280 0.19 +0.3
481,250 + A4249_RS02280 0.19 +0.3
481,250 + A4249_RS02280 0.19 +1.3
481,250 + A4249_RS02280 0.19 -0.1
481,250 + A4249_RS02280 0.19 -0.2
481,251 - A4249_RS02280 0.19 -1.0
481,251 - A4249_RS02280 0.19 -0.2
481,251 - A4249_RS02280 0.19 -0.9
481,251 - A4249_RS02280 0.19 +1.6
481,251 - A4249_RS02280 0.19 -0.3
481,252 + A4249_RS02280 0.19 -0.5
481,252 + A4249_RS02280 0.19 -0.4
481,252 + A4249_RS02280 0.19 +0.2
481,252 + A4249_RS02280 0.19 +1.1
481,252 + A4249_RS02280 0.19 -0.9
481,252 + A4249_RS02280 0.19 -0.7
481,252 + A4249_RS02280 0.19 +0.1
481,252 + A4249_RS02280 0.19 +0.3
481,252 + A4249_RS02280 0.19 -0.8
481,252 + A4249_RS02280 0.19 +0.3
481,253 - A4249_RS02280 0.19 +1.3
481,253 - A4249_RS02280 0.19 +0.1
481,253 - A4249_RS02280 0.19 -0.2
481,253 - A4249_RS02280 0.19 +2.3
481,253 - A4249_RS02280 0.19 -0.7
481,253 - A4249_RS02280 0.19 +0.3
481,266 + A4249_RS02280 0.20 -0.3
481,266 + A4249_RS02280 0.20 -0.6
481,267 - A4249_RS02280 0.20 -0.5

Or see this region's nucleotide sequence