Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00985

Experiment: D-Glucose (C); 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00980 and A4249_RS00985 are separated by 232 nucleotidesA4249_RS00985 and A4249_RS00990 are separated by 72 nucleotidesA4249_RS00990 and A4249_RS00995 are separated by 145 nucleotides A4249_RS00980: A4249_RS00980 - pyruvate, phosphate dikinase, at 183,702 to 186,383 _RS00980 A4249_RS00985: A4249_RS00985 - porin family protein, at 186,616 to 187,143 _RS00985 A4249_RS00990: A4249_RS00990 - hypothetical protein, at 187,216 to 187,476 _RS00990 A4249_RS00995: A4249_RS00995 - M48 family metallopeptidase, at 187,622 to 188,827 _RS00995 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 185.773 kb on - strand, within A4249_RS00980at 185.889 kb on + strand, within A4249_RS00980at 185.889 kb on + strand, within A4249_RS00980at 185.889 kb on + strand, within A4249_RS00980at 185.889 kb on + strand, within A4249_RS00980at 185.890 kb on - strand, within A4249_RS00980at 185.890 kb on - strand, within A4249_RS00980at 185.955 kb on + strand, within A4249_RS00980at 185.955 kb on + strand, within A4249_RS00980at 185.955 kb on + strand, within A4249_RS00980at 185.955 kb on + strand, within A4249_RS00980at 185.956 kb on - strand, within A4249_RS00980at 185.956 kb on - strand, within A4249_RS00980at 185.956 kb on - strand, within A4249_RS00980at 185.956 kb on - strand, within A4249_RS00980at 186.018 kb on + strand, within A4249_RS00980at 186.018 kb on + strand, within A4249_RS00980at 186.018 kb on + strand, within A4249_RS00980at 186.019 kb on - strand, within A4249_RS00980at 186.108 kb on + strand, within A4249_RS00980at 186.108 kb on + strand, within A4249_RS00980at 186.108 kb on + strand, within A4249_RS00980at 186.108 kb on + strand, within A4249_RS00980at 186.109 kb on - strand, within A4249_RS00980at 186.109 kb on - strand, within A4249_RS00980at 186.109 kb on - strand, within A4249_RS00980at 186.145 kb on + strandat 186.146 kb on - strandat 186.146 kb on - strandat 186.146 kb on - strandat 186.294 kb on + strandat 186.294 kb on + strandat 186.294 kb on + strandat 186.294 kb on + strandat 186.294 kb on + strandat 186.294 kb on + strandat 186.294 kb on + strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.295 kb on - strandat 186.391 kb on + strandat 186.391 kb on + strandat 186.391 kb on + strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.392 kb on - strandat 186.481 kb on - strandat 186.481 kb on - strandat 186.551 kb on + strandat 186.607 kb on + strandat 186.787 kb on + strand, within A4249_RS00985at 186.787 kb on + strand, within A4249_RS00985at 186.787 kb on + strand, within A4249_RS00985at 186.787 kb on + strand, within A4249_RS00985at 186.788 kb on - strand, within A4249_RS00985at 186.788 kb on - strand, within A4249_RS00985at 186.788 kb on - strand, within A4249_RS00985at 186.788 kb on - strand, within A4249_RS00985at 186.788 kb on - strand, within A4249_RS00985at 186.889 kb on + strand, within A4249_RS00985at 186.890 kb on - strand, within A4249_RS00985at 186.890 kb on - strand, within A4249_RS00985at 187.016 kb on - strand, within A4249_RS00985at 187.016 kb on - strand, within A4249_RS00985at 187.016 kb on - strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.033 kb on + strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.034 kb on - strand, within A4249_RS00985at 187.037 kb on - strand, within A4249_RS00985at 187.037 kb on - strand, within A4249_RS00985at 187.114 kb on + strandat 187.114 kb on + strandat 187.115 kb on - strandat 187.115 kb on - strandat 187.126 kb on + strandat 187.126 kb on + strandat 187.126 kb on + strandat 187.126 kb on + strandat 187.126 kb on + strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.127 kb on - strandat 187.161 kb on - strandat 187.287 kb on - strand, within A4249_RS00990at 187.289 kb on + strand, within A4249_RS00990at 187.289 kb on + strand, within A4249_RS00990at 187.289 kb on + strand, within A4249_RS00990at 187.289 kb on + strand, within A4249_RS00990at 187.289 kb on + strand, within A4249_RS00990at 187.290 kb on - strand, within A4249_RS00990at 187.290 kb on - strand, within A4249_RS00990at 187.428 kb on + strand, within A4249_RS00990at 187.571 kb on - strandat 187.580 kb on + strandat 187.703 kb on + strandat 187.703 kb on + strandat 187.703 kb on + strandat 187.703 kb on + strandat 187.704 kb on - strandat 187.704 kb on - strandat 187.704 kb on - strandat 187.704 kb on - strandat 187.704 kb on - strandat 187.705 kb on + strandat 187.706 kb on - strandat 187.706 kb on - strandat 187.706 kb on - strandat 187.862 kb on + strand, within A4249_RS00995at 187.862 kb on + strand, within A4249_RS00995at 187.863 kb on - strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.904 kb on + strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.905 kb on - strand, within A4249_RS00995at 187.931 kb on + strand, within A4249_RS00995at 187.931 kb on + strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.932 kb on - strand, within A4249_RS00995at 187.992 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.030 kb on + strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995at 188.031 kb on - strand, within A4249_RS00995

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); 20C
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185,773 - A4249_RS00980 0.77 +0.6
185,889 + A4249_RS00980 0.82 -0.1
185,889 + A4249_RS00980 0.82 +1.5
185,889 + A4249_RS00980 0.82 -0.1
185,889 + A4249_RS00980 0.82 +0.1
185,890 - A4249_RS00980 0.82 +0.5
185,890 - A4249_RS00980 0.82 +1.0
185,955 + A4249_RS00980 0.84 +0.1
185,955 + A4249_RS00980 0.84 +0.4
185,955 + A4249_RS00980 0.84 +0.2
185,955 + A4249_RS00980 0.84 -0.6
185,956 - A4249_RS00980 0.84 +0.6
185,956 - A4249_RS00980 0.84 -0.2
185,956 - A4249_RS00980 0.84 +1.1
185,956 - A4249_RS00980 0.84 -0.3
186,018 + A4249_RS00980 0.86 -0.9
186,018 + A4249_RS00980 0.86 -0.1
186,018 + A4249_RS00980 0.86 -0.3
186,019 - A4249_RS00980 0.86 -0.3
186,108 + A4249_RS00980 0.90 +0.6
186,108 + A4249_RS00980 0.90 -0.7
186,108 + A4249_RS00980 0.90 -0.6
186,108 + A4249_RS00980 0.90 +0.4
186,109 - A4249_RS00980 0.90 -0.1
186,109 - A4249_RS00980 0.90 +0.2
186,109 - A4249_RS00980 0.90 +0.6
186,145 + +0.4
186,146 - -0.1
186,146 - -1.2
186,146 - -0.3
186,294 + +0.5
186,294 + +0.1
186,294 + +0.2
186,294 + +0.1
186,294 + -0.9
186,294 + +0.1
186,294 + -0.0
186,295 - -0.6
186,295 - +0.3
186,295 - +1.9
186,295 - -0.0
186,295 - -0.9
186,295 - -0.4
186,295 - +0.3
186,295 - -0.1
186,295 - -0.3
186,295 - -0.4
186,295 - -1.0
186,391 + -0.1
186,391 + -1.4
186,391 + +0.1
186,392 - +0.1
186,392 - -1.8
186,392 - -0.8
186,392 - +0.4
186,392 - -1.5
186,392 - -0.3
186,392 - +0.8
186,392 - -0.4
186,481 - -0.0
186,481 - -1.3
186,551 + -0.6
186,607 + +0.7
186,787 + A4249_RS00985 0.32 +0.5
186,787 + A4249_RS00985 0.32 +0.4
186,787 + A4249_RS00985 0.32 -0.3
186,787 + A4249_RS00985 0.32 -0.4
186,788 - A4249_RS00985 0.33 +0.4
186,788 - A4249_RS00985 0.33 -0.8
186,788 - A4249_RS00985 0.33 +1.0
186,788 - A4249_RS00985 0.33 -0.1
186,788 - A4249_RS00985 0.33 +0.3
186,889 + A4249_RS00985 0.52 -0.4
186,890 - A4249_RS00985 0.52 +0.6
186,890 - A4249_RS00985 0.52 -0.2
187,016 - A4249_RS00985 0.76 +0.9
187,016 - A4249_RS00985 0.76 -0.3
187,016 - A4249_RS00985 0.76 -1.6
187,033 + A4249_RS00985 0.79 +0.3
187,033 + A4249_RS00985 0.79 +0.1
187,033 + A4249_RS00985 0.79 +2.4
187,033 + A4249_RS00985 0.79 +0.1
187,033 + A4249_RS00985 0.79 +0.9
187,033 + A4249_RS00985 0.79 -0.6
187,033 + A4249_RS00985 0.79 +0.1
187,033 + A4249_RS00985 0.79 -0.6
187,033 + A4249_RS00985 0.79 -0.0
187,033 + A4249_RS00985 0.79 -0.1
187,034 - A4249_RS00985 0.79 +1.8
187,034 - A4249_RS00985 0.79 -0.6
187,034 - A4249_RS00985 0.79 -0.7
187,034 - A4249_RS00985 0.79 +0.4
187,034 - A4249_RS00985 0.79 +1.6
187,034 - A4249_RS00985 0.79 +0.4
187,034 - A4249_RS00985 0.79 -0.1
187,034 - A4249_RS00985 0.79 +0.2
187,034 - A4249_RS00985 0.79 -0.6
187,034 - A4249_RS00985 0.79 -0.6
187,034 - A4249_RS00985 0.79 -0.2
187,037 - A4249_RS00985 0.80 +0.5
187,037 - A4249_RS00985 0.80 +0.5
187,114 + +0.9
187,114 + -0.4
187,115 - +0.8
187,115 - +0.4
187,126 + +0.1
187,126 + +0.6
187,126 + +0.0
187,126 + +0.4
187,126 + +0.1
187,127 - -0.1
187,127 - +0.4
187,127 - +0.9
187,127 - +0.0
187,127 - +1.6
187,127 - +0.6
187,127 - -0.9
187,161 - -0.6
187,287 - A4249_RS00990 0.27 +1.6
187,289 + A4249_RS00990 0.28 +0.8
187,289 + A4249_RS00990 0.28 +0.2
187,289 + A4249_RS00990 0.28 +0.4
187,289 + A4249_RS00990 0.28 -1.9
187,289 + A4249_RS00990 0.28 -1.0
187,290 - A4249_RS00990 0.28 -0.3
187,290 - A4249_RS00990 0.28 -0.5
187,428 + A4249_RS00990 0.81 +1.4
187,571 - -1.5
187,580 + -0.7
187,703 + -0.3
187,703 + -0.1
187,703 + +1.0
187,703 + +0.0
187,704 - -0.1
187,704 - +0.5
187,704 - -1.1
187,704 - +0.7
187,704 - +0.9
187,705 + +0.8
187,706 - +0.4
187,706 - -0.2
187,706 - +0.6
187,862 + A4249_RS00995 0.20 -0.6
187,862 + A4249_RS00995 0.20 -0.2
187,863 - A4249_RS00995 0.20 -0.1
187,904 + A4249_RS00995 0.23 +0.3
187,904 + A4249_RS00995 0.23 -1.5
187,904 + A4249_RS00995 0.23 -1.1
187,904 + A4249_RS00995 0.23 +1.4
187,905 - A4249_RS00995 0.23 +2.4
187,905 - A4249_RS00995 0.23 +1.1
187,905 - A4249_RS00995 0.23 -0.2
187,905 - A4249_RS00995 0.23 -1.6
187,905 - A4249_RS00995 0.23 -0.0
187,931 + A4249_RS00995 0.26 -0.1
187,931 + A4249_RS00995 0.26 -0.6
187,932 - A4249_RS00995 0.26 -0.6
187,932 - A4249_RS00995 0.26 -1.8
187,932 - A4249_RS00995 0.26 -0.1
187,932 - A4249_RS00995 0.26 -0.3
187,932 - A4249_RS00995 0.26 -1.0
187,932 - A4249_RS00995 0.26 -0.1
187,932 - A4249_RS00995 0.26 -2.1
187,992 + A4249_RS00995 0.31 -0.2
188,030 + A4249_RS00995 0.34 +0.1
188,030 + A4249_RS00995 0.34 +0.5
188,030 + A4249_RS00995 0.34 +0.5
188,030 + A4249_RS00995 0.34 -0.5
188,030 + A4249_RS00995 0.34 -0.1
188,030 + A4249_RS00995 0.34 -0.6
188,030 + A4249_RS00995 0.34 -1.2
188,030 + A4249_RS00995 0.34 +0.4
188,031 - A4249_RS00995 0.34 -0.4
188,031 - A4249_RS00995 0.34 -0.6
188,031 - A4249_RS00995 0.34 +2.1
188,031 - A4249_RS00995 0.34 +0.4
188,031 - A4249_RS00995 0.34 -0.5
188,031 - A4249_RS00995 0.34 +0.4
188,031 - A4249_RS00995 0.34 -1.1
188,031 - A4249_RS00995 0.34 +1.1

Or see this region's nucleotide sequence