Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04011

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04010 and OHPLBJKB_04011 are separated by 176 nucleotidesOHPLBJKB_04011 and OHPLBJKB_04012 are separated by 92 nucleotides OHPLBJKB_04010: OHPLBJKB_04010 - Maltose/maltodextrin import ATP-binding protein MalK, at 4,206,357 to 4,207,472 _04010 OHPLBJKB_04011: OHPLBJKB_04011 - hypothetical protein, at 4,207,649 to 4,207,744 _04011 OHPLBJKB_04012: OHPLBJKB_04012 - Maltose-binding periplasmic protein, at 4,207,837 to 4,209,027 _04012 Position (kb) 4207 4208Strain fitness (log2 ratio) -2 -1 0 1at 4206.741 kb on + strand, within OHPLBJKB_04010at 4206.809 kb on - strand, within OHPLBJKB_04010at 4206.809 kb on - strand, within OHPLBJKB_04010at 4206.907 kb on + strand, within OHPLBJKB_04010at 4206.908 kb on - strand, within OHPLBJKB_04010at 4207.011 kb on + strand, within OHPLBJKB_04010at 4207.011 kb on + strand, within OHPLBJKB_04010at 4207.012 kb on - strand, within OHPLBJKB_04010at 4207.187 kb on + strand, within OHPLBJKB_04010at 4207.187 kb on + strand, within OHPLBJKB_04010at 4207.198 kb on - strand, within OHPLBJKB_04010at 4207.214 kb on - strand, within OHPLBJKB_04010at 4207.462 kb on - strandat 4207.462 kb on - strandat 4207.462 kb on - strandat 4207.462 kb on - strandat 4207.489 kb on - strandat 4207.530 kb on - strandat 4207.551 kb on + strandat 4207.552 kb on - strandat 4207.636 kb on - strandat 4207.677 kb on + strand, within OHPLBJKB_04011at 4207.678 kb on - strand, within OHPLBJKB_04011at 4207.784 kb on + strandat 4207.784 kb on + strandat 4207.796 kb on - strandat 4207.796 kb on - strandat 4207.831 kb on + strandat 4207.831 kb on + strandat 4207.831 kb on + strandat 4207.832 kb on - strandat 4207.832 kb on - strandat 4207.836 kb on + strandat 4207.929 kb on + strandat 4207.929 kb on + strandat 4207.930 kb on - strandat 4207.930 kb on - strandat 4207.938 kb on - strandat 4207.963 kb on + strand, within OHPLBJKB_04012at 4207.963 kb on + strand, within OHPLBJKB_04012at 4207.964 kb on - strand, within OHPLBJKB_04012at 4207.964 kb on - strand, within OHPLBJKB_04012at 4207.966 kb on - strand, within OHPLBJKB_04012at 4208.005 kb on - strand, within OHPLBJKB_04012at 4208.013 kb on + strand, within OHPLBJKB_04012at 4208.014 kb on - strand, within OHPLBJKB_04012at 4208.014 kb on - strand, within OHPLBJKB_04012at 4208.091 kb on + strand, within OHPLBJKB_04012at 4208.092 kb on - strand, within OHPLBJKB_04012at 4208.264 kb on - strand, within OHPLBJKB_04012at 4208.265 kb on + strand, within OHPLBJKB_04012at 4208.344 kb on - strand, within OHPLBJKB_04012at 4208.377 kb on + strand, within OHPLBJKB_04012at 4208.377 kb on + strand, within OHPLBJKB_04012at 4208.378 kb on - strand, within OHPLBJKB_04012at 4208.440 kb on + strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.449 kb on - strand, within OHPLBJKB_04012at 4208.508 kb on + strand, within OHPLBJKB_04012at 4208.569 kb on - strand, within OHPLBJKB_04012at 4208.638 kb on + strand, within OHPLBJKB_04012at 4208.639 kb on - strand, within OHPLBJKB_04012at 4208.679 kb on + strand, within OHPLBJKB_04012at 4208.712 kb on + strand, within OHPLBJKB_04012

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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4,206,741 + OHPLBJKB_04010 0.34 +0.4
4,206,809 - OHPLBJKB_04010 0.41 +0.5
4,206,809 - OHPLBJKB_04010 0.41 +0.3
4,206,907 + OHPLBJKB_04010 0.49 +0.1
4,206,908 - OHPLBJKB_04010 0.49 -0.7
4,207,011 + OHPLBJKB_04010 0.59 +0.5
4,207,011 + OHPLBJKB_04010 0.59 +0.1
4,207,012 - OHPLBJKB_04010 0.59 +0.7
4,207,187 + OHPLBJKB_04010 0.74 +0.3
4,207,187 + OHPLBJKB_04010 0.74 -0.1
4,207,198 - OHPLBJKB_04010 0.75 +0.6
4,207,214 - OHPLBJKB_04010 0.77 -0.4
4,207,462 - -0.1
4,207,462 - +0.6
4,207,462 - +0.6
4,207,462 - -0.8
4,207,489 - +0.5
4,207,530 - -0.5
4,207,551 + -0.4
4,207,552 - +0.7
4,207,636 - +0.5
4,207,677 + OHPLBJKB_04011 0.29 -1.1
4,207,678 - OHPLBJKB_04011 0.30 -0.3
4,207,784 + -0.2
4,207,784 + -1.1
4,207,796 - +0.2
4,207,796 - -0.1
4,207,831 + +1.0
4,207,831 + -0.2
4,207,831 + +0.1
4,207,832 - -2.0
4,207,832 - -0.9
4,207,836 + -0.4
4,207,929 + -0.1
4,207,929 + +0.3
4,207,930 - -0.2
4,207,930 - +0.4
4,207,938 - -0.0
4,207,963 + OHPLBJKB_04012 0.11 -0.0
4,207,963 + OHPLBJKB_04012 0.11 -1.0
4,207,964 - OHPLBJKB_04012 0.11 +0.0
4,207,964 - OHPLBJKB_04012 0.11 -0.6
4,207,966 - OHPLBJKB_04012 0.11 -0.5
4,208,005 - OHPLBJKB_04012 0.14 +0.3
4,208,013 + OHPLBJKB_04012 0.15 +0.2
4,208,014 - OHPLBJKB_04012 0.15 -0.4
4,208,014 - OHPLBJKB_04012 0.15 -0.3
4,208,091 + OHPLBJKB_04012 0.21 +0.8
4,208,092 - OHPLBJKB_04012 0.21 -0.1
4,208,264 - OHPLBJKB_04012 0.36 -0.0
4,208,265 + OHPLBJKB_04012 0.36 +0.4
4,208,344 - OHPLBJKB_04012 0.43 +0.0
4,208,377 + OHPLBJKB_04012 0.45 +0.4
4,208,377 + OHPLBJKB_04012 0.45 -0.7
4,208,378 - OHPLBJKB_04012 0.45 +0.3
4,208,440 + OHPLBJKB_04012 0.51 -0.6
4,208,441 - OHPLBJKB_04012 0.51 -0.5
4,208,441 - OHPLBJKB_04012 0.51 +0.7
4,208,441 - OHPLBJKB_04012 0.51 +0.7
4,208,441 - OHPLBJKB_04012 0.51 -0.1
4,208,441 - OHPLBJKB_04012 0.51 -0.5
4,208,449 - OHPLBJKB_04012 0.51 -0.9
4,208,508 + OHPLBJKB_04012 0.56 +0.6
4,208,569 - OHPLBJKB_04012 0.61 -0.5
4,208,638 + OHPLBJKB_04012 0.67 +0.1
4,208,639 - OHPLBJKB_04012 0.67 -0.7
4,208,679 + OHPLBJKB_04012 0.71 +0.0
4,208,712 + OHPLBJKB_04012 0.73 -0.1

Or see this region's nucleotide sequence