Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04008

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04005 and OHPLBJKB_04006 are separated by 57 nucleotidesOHPLBJKB_04006 and OHPLBJKB_04007 are separated by 101 nucleotidesOHPLBJKB_04007 and OHPLBJKB_04008 overlap by 26 nucleotidesOHPLBJKB_04008 and OHPLBJKB_04009 are separated by 242 nucleotides OHPLBJKB_04005: OHPLBJKB_04005 - hypothetical protein, at 4,201,973 to 4,203,301 _04005 OHPLBJKB_04006: OHPLBJKB_04006 - hypothetical protein, at 4,203,359 to 4,203,553 _04006 OHPLBJKB_04007: OHPLBJKB_04007 - hypothetical protein, at 4,203,655 to 4,203,807 _04007 OHPLBJKB_04008: OHPLBJKB_04008 - hypothetical protein, at 4,203,782 to 4,204,702 _04008 OHPLBJKB_04009: OHPLBJKB_04009 - Maltoporin, at 4,204,945 to 4,206,282 _04009 Position (kb) 4203 4204 4205Strain fitness (log2 ratio) -1 0 1 2at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.874 kb on - strand, within OHPLBJKB_04005at 4203.008 kb on - strand, within OHPLBJKB_04005at 4203.086 kb on - strand, within OHPLBJKB_04005at 4203.153 kb on - strand, within OHPLBJKB_04005at 4203.246 kb on + strandat 4203.263 kb on - strandat 4203.327 kb on - strandat 4203.457 kb on + strand, within OHPLBJKB_04006at 4203.548 kb on + strandat 4203.549 kb on - strandat 4203.779 kb on + strand, within OHPLBJKB_04007at 4203.797 kb on + strandat 4203.808 kb on + strandat 4203.913 kb on + strand, within OHPLBJKB_04008at 4204.001 kb on - strand, within OHPLBJKB_04008at 4204.038 kb on - strand, within OHPLBJKB_04008at 4204.046 kb on + strand, within OHPLBJKB_04008at 4204.047 kb on - strand, within OHPLBJKB_04008at 4204.106 kb on - strand, within OHPLBJKB_04008at 4204.162 kb on - strand, within OHPLBJKB_04008at 4204.321 kb on - strand, within OHPLBJKB_04008at 4204.455 kb on + strand, within OHPLBJKB_04008at 4204.614 kb on + strandat 4204.614 kb on + strandat 4204.614 kb on + strandat 4204.614 kb on + strandat 4204.614 kb on + strandat 4204.615 kb on - strandat 4204.615 kb on - strandat 4204.735 kb on - strandat 4204.842 kb on + strandat 4204.861 kb on - strandat 4204.869 kb on + strandat 4204.944 kb on - strandat 4204.947 kb on - strandat 4204.947 kb on - strandat 4205.072 kb on + strandat 4205.073 kb on - strandat 4205.073 kb on - strandat 4205.073 kb on - strandat 4205.078 kb on + strandat 4205.078 kb on + strandat 4205.105 kb on + strand, within OHPLBJKB_04009at 4205.106 kb on - strand, within OHPLBJKB_04009at 4205.106 kb on - strand, within OHPLBJKB_04009at 4205.270 kb on + strand, within OHPLBJKB_04009at 4205.270 kb on + strand, within OHPLBJKB_04009at 4205.271 kb on - strand, within OHPLBJKB_04009at 4205.271 kb on - strand, within OHPLBJKB_04009at 4205.271 kb on - strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.336 kb on + strand, within OHPLBJKB_04009at 4205.337 kb on - strand, within OHPLBJKB_04009at 4205.337 kb on - strand, within OHPLBJKB_04009at 4205.337 kb on - strand, within OHPLBJKB_04009at 4205.340 kb on + strand, within OHPLBJKB_04009at 4205.341 kb on - strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.348 kb on + strand, within OHPLBJKB_04009at 4205.349 kb on - strand, within OHPLBJKB_04009at 4205.349 kb on - strand, within OHPLBJKB_04009at 4205.349 kb on - strand, within OHPLBJKB_04009at 4205.424 kb on + strand, within OHPLBJKB_04009at 4205.505 kb on + strand, within OHPLBJKB_04009at 4205.554 kb on - strand, within OHPLBJKB_04009at 4205.606 kb on + strand, within OHPLBJKB_04009at 4205.606 kb on + strand, within OHPLBJKB_04009at 4205.607 kb on - strand, within OHPLBJKB_04009at 4205.610 kb on + strand, within OHPLBJKB_04009at 4205.611 kb on - strand, within OHPLBJKB_04009at 4205.650 kb on + strand, within OHPLBJKB_04009at 4205.651 kb on - strand, within OHPLBJKB_04009

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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4,202,842 + OHPLBJKB_04005 0.65 +0.5
4,202,842 + OHPLBJKB_04005 0.65 +0.5
4,202,842 + OHPLBJKB_04005 0.65 -0.4
4,202,842 + OHPLBJKB_04005 0.65 -0.5
4,202,874 - OHPLBJKB_04005 0.68 +0.5
4,203,008 - OHPLBJKB_04005 0.78 +1.5
4,203,086 - OHPLBJKB_04005 0.84 +0.8
4,203,153 - OHPLBJKB_04005 0.89 -0.7
4,203,246 + +0.7
4,203,263 - +0.6
4,203,327 - +0.3
4,203,457 + OHPLBJKB_04006 0.50 -0.1
4,203,548 + +0.6
4,203,549 - -0.1
4,203,779 + OHPLBJKB_04007 0.81 +0.3
4,203,797 + +0.6
4,203,808 + +0.5
4,203,913 + OHPLBJKB_04008 0.14 +0.5
4,204,001 - OHPLBJKB_04008 0.24 -0.4
4,204,038 - OHPLBJKB_04008 0.28 +0.3
4,204,046 + OHPLBJKB_04008 0.29 -0.7
4,204,047 - OHPLBJKB_04008 0.29 +0.3
4,204,106 - OHPLBJKB_04008 0.35 +0.7
4,204,162 - OHPLBJKB_04008 0.41 +0.5
4,204,321 - OHPLBJKB_04008 0.59 +2.4
4,204,455 + OHPLBJKB_04008 0.73 +0.1
4,204,614 + +1.1
4,204,614 + +0.1
4,204,614 + -0.5
4,204,614 + -0.2
4,204,614 + +0.1
4,204,615 - -0.5
4,204,615 - -0.1
4,204,735 - -1.2
4,204,842 + +0.4
4,204,861 - +0.8
4,204,869 + +0.2
4,204,944 - +0.0
4,204,947 - -0.0
4,204,947 - -0.0
4,205,072 + -0.1
4,205,073 - +0.0
4,205,073 - -0.3
4,205,073 - -0.0
4,205,078 + +0.5
4,205,078 + +0.4
4,205,105 + OHPLBJKB_04009 0.12 -0.6
4,205,106 - OHPLBJKB_04009 0.12 +0.3
4,205,106 - OHPLBJKB_04009 0.12 +0.2
4,205,270 + OHPLBJKB_04009 0.24 +0.1
4,205,270 + OHPLBJKB_04009 0.24 -1.7
4,205,271 - OHPLBJKB_04009 0.24 -0.6
4,205,271 - OHPLBJKB_04009 0.24 -0.4
4,205,271 - OHPLBJKB_04009 0.24 -0.5
4,205,336 + OHPLBJKB_04009 0.29 -0.1
4,205,336 + OHPLBJKB_04009 0.29 +0.1
4,205,336 + OHPLBJKB_04009 0.29 -0.7
4,205,336 + OHPLBJKB_04009 0.29 +0.9
4,205,336 + OHPLBJKB_04009 0.29 +0.5
4,205,336 + OHPLBJKB_04009 0.29 -0.5
4,205,336 + OHPLBJKB_04009 0.29 +0.1
4,205,337 - OHPLBJKB_04009 0.29 -0.2
4,205,337 - OHPLBJKB_04009 0.29 -0.1
4,205,337 - OHPLBJKB_04009 0.29 -0.7
4,205,340 + OHPLBJKB_04009 0.30 -0.9
4,205,341 - OHPLBJKB_04009 0.30 -0.4
4,205,348 + OHPLBJKB_04009 0.30 +1.1
4,205,348 + OHPLBJKB_04009 0.30 -0.3
4,205,348 + OHPLBJKB_04009 0.30 +0.4
4,205,348 + OHPLBJKB_04009 0.30 -0.0
4,205,348 + OHPLBJKB_04009 0.30 -0.8
4,205,348 + OHPLBJKB_04009 0.30 -0.9
4,205,348 + OHPLBJKB_04009 0.30 -0.7
4,205,348 + OHPLBJKB_04009 0.30 -0.1
4,205,348 + OHPLBJKB_04009 0.30 -0.2
4,205,348 + OHPLBJKB_04009 0.30 -0.9
4,205,348 + OHPLBJKB_04009 0.30 -0.2
4,205,348 + OHPLBJKB_04009 0.30 -0.7
4,205,349 - OHPLBJKB_04009 0.30 +0.2
4,205,349 - OHPLBJKB_04009 0.30 -0.1
4,205,349 - OHPLBJKB_04009 0.30 +0.1
4,205,424 + OHPLBJKB_04009 0.36 -0.1
4,205,505 + OHPLBJKB_04009 0.42 -0.1
4,205,554 - OHPLBJKB_04009 0.46 -0.3
4,205,606 + OHPLBJKB_04009 0.49 -0.1
4,205,606 + OHPLBJKB_04009 0.49 +0.1
4,205,607 - OHPLBJKB_04009 0.49 +0.4
4,205,610 + OHPLBJKB_04009 0.50 +0.5
4,205,611 - OHPLBJKB_04009 0.50 -0.6
4,205,650 + OHPLBJKB_04009 0.53 -0.7
4,205,651 - OHPLBJKB_04009 0.53 -0.9

Or see this region's nucleotide sequence