Experiment: HB-P24 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04005 and OHPLBJKB_04006 are separated by 57 nucleotides OHPLBJKB_04006 and OHPLBJKB_04007 are separated by 101 nucleotides OHPLBJKB_04007 and OHPLBJKB_04008 overlap by 26 nucleotides
OHPLBJKB_04005: OHPLBJKB_04005 - hypothetical protein, at 4,201,973 to 4,203,301
_04005
OHPLBJKB_04006: OHPLBJKB_04006 - hypothetical protein, at 4,203,359 to 4,203,553
_04006
OHPLBJKB_04007: OHPLBJKB_04007 - hypothetical protein, at 4,203,655 to 4,203,807
_04007
OHPLBJKB_04008: OHPLBJKB_04008 - hypothetical protein, at 4,203,782 to 4,204,702
_04008
Position (kb) 4203
4204 Strain fitness (log2 ratio) -1
0
1
2 at 4202.678 kb on + strand, within OHPLBJKB_04005 at 4202.842 kb on + strand, within OHPLBJKB_04005 at 4202.842 kb on + strand, within OHPLBJKB_04005 at 4202.842 kb on + strand, within OHPLBJKB_04005 at 4202.842 kb on + strand, within OHPLBJKB_04005 at 4202.874 kb on - strand, within OHPLBJKB_04005 at 4203.008 kb on - strand, within OHPLBJKB_04005 at 4203.086 kb on - strand, within OHPLBJKB_04005 at 4203.153 kb on - strand, within OHPLBJKB_04005 at 4203.246 kb on + strand at 4203.263 kb on - strand at 4203.327 kb on - strand at 4203.457 kb on + strand, within OHPLBJKB_04006 at 4203.548 kb on + strand at 4203.549 kb on - strand at 4203.779 kb on + strand, within OHPLBJKB_04007 at 4203.797 kb on + strand at 4203.808 kb on + strand at 4203.913 kb on + strand, within OHPLBJKB_04008 at 4204.001 kb on - strand, within OHPLBJKB_04008 at 4204.038 kb on - strand, within OHPLBJKB_04008 at 4204.046 kb on + strand, within OHPLBJKB_04008 at 4204.047 kb on - strand, within OHPLBJKB_04008 at 4204.106 kb on - strand, within OHPLBJKB_04008 at 4204.162 kb on - strand, within OHPLBJKB_04008 at 4204.321 kb on - strand, within OHPLBJKB_04008 at 4204.455 kb on + strand, within OHPLBJKB_04008 at 4204.614 kb on + strand at 4204.614 kb on + strand at 4204.614 kb on + strand at 4204.614 kb on + strand at 4204.614 kb on + strand at 4204.615 kb on - strand at 4204.615 kb on - strand at 4204.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HB-P24 MOI10 remove 4,202,678 + OHPLBJKB_04005 0.53 -0.2 4,202,842 + OHPLBJKB_04005 0.65 +0.5 4,202,842 + OHPLBJKB_04005 0.65 +0.5 4,202,842 + OHPLBJKB_04005 0.65 -0.4 4,202,842 + OHPLBJKB_04005 0.65 -0.5 4,202,874 - OHPLBJKB_04005 0.68 +0.5 4,203,008 - OHPLBJKB_04005 0.78 +1.5 4,203,086 - OHPLBJKB_04005 0.84 +0.8 4,203,153 - OHPLBJKB_04005 0.89 -0.7 4,203,246 + +0.7 4,203,263 - +0.6 4,203,327 - +0.3 4,203,457 + OHPLBJKB_04006 0.50 -0.1 4,203,548 + +0.6 4,203,549 - -0.1 4,203,779 + OHPLBJKB_04007 0.81 +0.3 4,203,797 + +0.6 4,203,808 + +0.5 4,203,913 + OHPLBJKB_04008 0.14 +0.5 4,204,001 - OHPLBJKB_04008 0.24 -0.4 4,204,038 - OHPLBJKB_04008 0.28 +0.3 4,204,046 + OHPLBJKB_04008 0.29 -0.7 4,204,047 - OHPLBJKB_04008 0.29 +0.3 4,204,106 - OHPLBJKB_04008 0.35 +0.7 4,204,162 - OHPLBJKB_04008 0.41 +0.5 4,204,321 - OHPLBJKB_04008 0.59 +2.4 4,204,455 + OHPLBJKB_04008 0.73 +0.1 4,204,614 + +1.1 4,204,614 + +0.1 4,204,614 + -0.5 4,204,614 + -0.2 4,204,614 + +0.1 4,204,615 - -0.5 4,204,615 - -0.1 4,204,735 - -1.2
Or see this region's nucleotide sequence