Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03783

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03782 and OHPLBJKB_03783 are separated by 100 nucleotidesOHPLBJKB_03783 and OHPLBJKB_03784 overlap by 14 nucleotides OHPLBJKB_03782: OHPLBJKB_03782 - Ornithine carbamoyltransferase subunit I, at 3,971,405 to 3,972,409 _03782 OHPLBJKB_03783: OHPLBJKB_03783 - putative protein YjgL, at 3,972,510 to 3,972,740 _03783 OHPLBJKB_03784: OHPLBJKB_03784 - putative protein YjgL, at 3,972,727 to 3,974,070 _03784 Position (kb) 3972 3973Strain fitness (log2 ratio) -2 -1 0 1 2at 3971.540 kb on - strand, within OHPLBJKB_03782at 3971.607 kb on - strand, within OHPLBJKB_03782at 3971.607 kb on - strand, within OHPLBJKB_03782at 3971.630 kb on + strand, within OHPLBJKB_03782at 3971.630 kb on + strand, within OHPLBJKB_03782at 3971.631 kb on - strand, within OHPLBJKB_03782at 3971.631 kb on - strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.705 kb on + strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.706 kb on - strand, within OHPLBJKB_03782at 3971.730 kb on - strand, within OHPLBJKB_03782at 3971.886 kb on - strand, within OHPLBJKB_03782at 3971.903 kb on - strand, within OHPLBJKB_03782at 3971.903 kb on - strand, within OHPLBJKB_03782at 3972.001 kb on + strand, within OHPLBJKB_03782at 3972.061 kb on - strand, within OHPLBJKB_03782at 3972.061 kb on - strand, within OHPLBJKB_03782at 3972.088 kb on + strand, within OHPLBJKB_03782at 3972.088 kb on + strand, within OHPLBJKB_03782at 3972.092 kb on + strand, within OHPLBJKB_03782at 3972.092 kb on + strand, within OHPLBJKB_03782at 3972.092 kb on + strand, within OHPLBJKB_03782at 3972.092 kb on + strand, within OHPLBJKB_03782at 3972.092 kb on + strand, within OHPLBJKB_03782at 3972.093 kb on - strand, within OHPLBJKB_03782at 3972.102 kb on + strand, within OHPLBJKB_03782at 3972.103 kb on - strand, within OHPLBJKB_03782at 3972.103 kb on - strand, within OHPLBJKB_03782at 3972.153 kb on + strand, within OHPLBJKB_03782at 3972.288 kb on + strand, within OHPLBJKB_03782at 3972.289 kb on - strand, within OHPLBJKB_03782at 3972.477 kb on + strandat 3972.666 kb on - strand, within OHPLBJKB_03783at 3972.670 kb on + strand, within OHPLBJKB_03783at 3972.719 kb on + strandat 3972.799 kb on + strandat 3973.046 kb on + strand, within OHPLBJKB_03784at 3973.047 kb on - strand, within OHPLBJKB_03784at 3973.112 kb on - strand, within OHPLBJKB_03784at 3973.170 kb on + strand, within OHPLBJKB_03784at 3973.260 kb on + strand, within OHPLBJKB_03784at 3973.261 kb on - strand, within OHPLBJKB_03784at 3973.358 kb on + strand, within OHPLBJKB_03784at 3973.358 kb on + strand, within OHPLBJKB_03784at 3973.359 kb on - strand, within OHPLBJKB_03784at 3973.573 kb on - strand, within OHPLBJKB_03784at 3973.573 kb on - strand, within OHPLBJKB_03784at 3973.583 kb on - strand, within OHPLBJKB_03784

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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3,971,540 - OHPLBJKB_03782 0.13 -0.8
3,971,607 - OHPLBJKB_03782 0.20 -0.5
3,971,607 - OHPLBJKB_03782 0.20 +0.1
3,971,630 + OHPLBJKB_03782 0.22 +0.4
3,971,630 + OHPLBJKB_03782 0.22 +0.5
3,971,631 - OHPLBJKB_03782 0.22 +0.3
3,971,631 - OHPLBJKB_03782 0.22 +0.6
3,971,705 + OHPLBJKB_03782 0.30 +0.2
3,971,705 + OHPLBJKB_03782 0.30 -0.0
3,971,705 + OHPLBJKB_03782 0.30 +1.0
3,971,705 + OHPLBJKB_03782 0.30 -1.2
3,971,705 + OHPLBJKB_03782 0.30 +0.1
3,971,705 + OHPLBJKB_03782 0.30 +0.3
3,971,705 + OHPLBJKB_03782 0.30 -0.6
3,971,705 + OHPLBJKB_03782 0.30 -0.4
3,971,705 + OHPLBJKB_03782 0.30 -0.6
3,971,705 + OHPLBJKB_03782 0.30 -1.0
3,971,706 - OHPLBJKB_03782 0.30 +0.3
3,971,706 - OHPLBJKB_03782 0.30 -1.2
3,971,706 - OHPLBJKB_03782 0.30 -0.1
3,971,706 - OHPLBJKB_03782 0.30 +0.2
3,971,706 - OHPLBJKB_03782 0.30 +0.3
3,971,706 - OHPLBJKB_03782 0.30 +0.9
3,971,706 - OHPLBJKB_03782 0.30 +0.7
3,971,730 - OHPLBJKB_03782 0.32 +0.1
3,971,886 - OHPLBJKB_03782 0.48 +0.2
3,971,903 - OHPLBJKB_03782 0.50 +0.3
3,971,903 - OHPLBJKB_03782 0.50 -1.1
3,972,001 + OHPLBJKB_03782 0.59 +0.6
3,972,061 - OHPLBJKB_03782 0.65 +0.9
3,972,061 - OHPLBJKB_03782 0.65 +0.4
3,972,088 + OHPLBJKB_03782 0.68 +0.0
3,972,088 + OHPLBJKB_03782 0.68 +0.5
3,972,092 + OHPLBJKB_03782 0.68 -0.0
3,972,092 + OHPLBJKB_03782 0.68 +0.3
3,972,092 + OHPLBJKB_03782 0.68 +0.7
3,972,092 + OHPLBJKB_03782 0.68 -1.8
3,972,092 + OHPLBJKB_03782 0.68 -0.4
3,972,093 - OHPLBJKB_03782 0.68 -1.9
3,972,102 + OHPLBJKB_03782 0.69 -0.2
3,972,103 - OHPLBJKB_03782 0.69 -0.1
3,972,103 - OHPLBJKB_03782 0.69 +0.0
3,972,153 + OHPLBJKB_03782 0.74 -0.5
3,972,288 + OHPLBJKB_03782 0.88 +1.8
3,972,289 - OHPLBJKB_03782 0.88 +0.4
3,972,477 + -0.7
3,972,666 - OHPLBJKB_03783 0.68 -0.4
3,972,670 + OHPLBJKB_03783 0.69 -0.8
3,972,719 + +0.2
3,972,799 + -1.1
3,973,046 + OHPLBJKB_03784 0.24 -0.5
3,973,047 - OHPLBJKB_03784 0.24 -0.4
3,973,112 - OHPLBJKB_03784 0.29 -0.0
3,973,170 + OHPLBJKB_03784 0.33 -0.6
3,973,260 + OHPLBJKB_03784 0.40 +0.8
3,973,261 - OHPLBJKB_03784 0.40 +0.7
3,973,358 + OHPLBJKB_03784 0.47 +1.2
3,973,358 + OHPLBJKB_03784 0.47 -1.0
3,973,359 - OHPLBJKB_03784 0.47 +0.5
3,973,573 - OHPLBJKB_03784 0.63 -0.5
3,973,573 - OHPLBJKB_03784 0.63 -0.7
3,973,583 - OHPLBJKB_03784 0.64 -0.1

Or see this region's nucleotide sequence