Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03414

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03412 and OHPLBJKB_03413 are separated by 185 nucleotidesOHPLBJKB_03413 and OHPLBJKB_03414 are separated by 2 nucleotidesOHPLBJKB_03414 and OHPLBJKB_03415 are separated by 155 nucleotidesOHPLBJKB_03415 and OHPLBJKB_03416 overlap by 30 nucleotides OHPLBJKB_03412: OHPLBJKB_03412 - hypothetical protein, at 3,565,442 to 3,566,215 _03412 OHPLBJKB_03413: OHPLBJKB_03413 - Antitoxin DinJ, at 3,566,401 to 3,566,661 _03413 OHPLBJKB_03414: OHPLBJKB_03414 - mRNA interferase toxin YafQ, at 3,566,664 to 3,566,942 _03414 OHPLBJKB_03415: OHPLBJKB_03415 - hypothetical protein, at 3,567,098 to 3,567,838 _03415 OHPLBJKB_03416: OHPLBJKB_03416 - Putative glutamine amidotransferase YafJ, at 3,567,809 to 3,568,576 _03416 Position (kb) 3566 3567Strain fitness (log2 ratio) -2 -1 0 1 2at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.680 kb on + strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.681 kb on - strand, within OHPLBJKB_03412at 3565.729 kb on - strand, within OHPLBJKB_03412at 3565.729 kb on - strand, within OHPLBJKB_03412at 3565.729 kb on - strand, within OHPLBJKB_03412at 3565.734 kb on + strand, within OHPLBJKB_03412at 3565.735 kb on - strand, within OHPLBJKB_03412at 3565.735 kb on - strand, within OHPLBJKB_03412at 3565.742 kb on + strand, within OHPLBJKB_03412at 3565.792 kb on - strand, within OHPLBJKB_03412at 3565.843 kb on + strand, within OHPLBJKB_03412at 3565.843 kb on + strand, within OHPLBJKB_03412at 3565.843 kb on + strand, within OHPLBJKB_03412at 3565.844 kb on - strand, within OHPLBJKB_03412at 3565.946 kb on + strand, within OHPLBJKB_03412at 3565.947 kb on - strand, within OHPLBJKB_03412at 3566.005 kb on + strand, within OHPLBJKB_03412at 3566.005 kb on + strand, within OHPLBJKB_03412at 3566.006 kb on - strand, within OHPLBJKB_03412at 3566.007 kb on + strand, within OHPLBJKB_03412at 3566.007 kb on + strand, within OHPLBJKB_03412at 3566.007 kb on + strand, within OHPLBJKB_03412at 3566.007 kb on + strand, within OHPLBJKB_03412at 3566.007 kb on + strand, within OHPLBJKB_03412at 3566.008 kb on - strand, within OHPLBJKB_03412at 3566.008 kb on - strand, within OHPLBJKB_03412at 3566.008 kb on - strand, within OHPLBJKB_03412at 3566.008 kb on - strand, within OHPLBJKB_03412at 3566.008 kb on - strand, within OHPLBJKB_03412at 3566.098 kb on + strand, within OHPLBJKB_03412at 3566.098 kb on + strand, within OHPLBJKB_03412at 3566.099 kb on - strand, within OHPLBJKB_03412at 3566.099 kb on - strand, within OHPLBJKB_03412at 3566.150 kb on + strandat 3566.191 kb on + strandat 3566.191 kb on + strandat 3566.191 kb on + strandat 3566.192 kb on - strandat 3566.230 kb on - strandat 3566.256 kb on - strandat 3566.267 kb on - strandat 3566.280 kb on + strandat 3566.285 kb on - strandat 3566.295 kb on + strandat 3566.299 kb on + strandat 3566.320 kb on + strandat 3566.374 kb on + strandat 3566.374 kb on + strandat 3566.380 kb on + strandat 3566.570 kb on + strand, within OHPLBJKB_03413at 3566.616 kb on + strand, within OHPLBJKB_03413at 3566.711 kb on - strand, within OHPLBJKB_03414at 3566.745 kb on - strand, within OHPLBJKB_03414at 3566.754 kb on + strand, within OHPLBJKB_03414at 3566.755 kb on - strand, within OHPLBJKB_03414at 3566.760 kb on - strand, within OHPLBJKB_03414at 3566.772 kb on - strand, within OHPLBJKB_03414at 3566.802 kb on + strand, within OHPLBJKB_03414at 3567.032 kb on + strandat 3567.097 kb on + strandat 3567.098 kb on - strandat 3567.098 kb on - strandat 3567.103 kb on + strandat 3567.103 kb on + strandat 3567.115 kb on - strandat 3567.172 kb on + strand, within OHPLBJKB_03415at 3567.172 kb on + strand, within OHPLBJKB_03415at 3567.173 kb on - strand, within OHPLBJKB_03415at 3567.200 kb on + strand, within OHPLBJKB_03415at 3567.200 kb on + strand, within OHPLBJKB_03415at 3567.200 kb on + strand, within OHPLBJKB_03415at 3567.201 kb on - strand, within OHPLBJKB_03415at 3567.202 kb on + strand, within OHPLBJKB_03415at 3567.202 kb on + strand, within OHPLBJKB_03415at 3567.202 kb on + strand, within OHPLBJKB_03415at 3567.202 kb on + strand, within OHPLBJKB_03415at 3567.202 kb on + strand, within OHPLBJKB_03415at 3567.202 kb on + strand, within OHPLBJKB_03415at 3567.203 kb on - strand, within OHPLBJKB_03415at 3567.230 kb on + strand, within OHPLBJKB_03415at 3567.256 kb on + strand, within OHPLBJKB_03415at 3567.256 kb on + strand, within OHPLBJKB_03415at 3567.257 kb on - strand, within OHPLBJKB_03415at 3567.257 kb on - strand, within OHPLBJKB_03415at 3567.269 kb on + strand, within OHPLBJKB_03415at 3567.269 kb on + strand, within OHPLBJKB_03415at 3567.310 kb on + strand, within OHPLBJKB_03415at 3567.319 kb on + strand, within OHPLBJKB_03415at 3567.323 kb on + strand, within OHPLBJKB_03415at 3567.384 kb on - strand, within OHPLBJKB_03415at 3567.384 kb on - strand, within OHPLBJKB_03415at 3567.384 kb on - strand, within OHPLBJKB_03415at 3567.405 kb on + strand, within OHPLBJKB_03415at 3567.425 kb on + strand, within OHPLBJKB_03415at 3567.425 kb on + strand, within OHPLBJKB_03415at 3567.425 kb on + strand, within OHPLBJKB_03415at 3567.426 kb on - strand, within OHPLBJKB_03415at 3567.426 kb on - strand, within OHPLBJKB_03415at 3567.439 kb on + strand, within OHPLBJKB_03415at 3567.458 kb on + strand, within OHPLBJKB_03415at 3567.458 kb on + strand, within OHPLBJKB_03415at 3567.459 kb on - strand, within OHPLBJKB_03415at 3567.476 kb on + strand, within OHPLBJKB_03415at 3567.617 kb on + strand, within OHPLBJKB_03415at 3567.618 kb on - strand, within OHPLBJKB_03415at 3567.640 kb on + strand, within OHPLBJKB_03415at 3567.644 kb on - strand, within OHPLBJKB_03415at 3567.644 kb on - strand, within OHPLBJKB_03415at 3567.670 kb on + strand, within OHPLBJKB_03415at 3567.758 kb on + strand, within OHPLBJKB_03415at 3567.758 kb on + strand, within OHPLBJKB_03415at 3567.815 kb on + strandat 3567.816 kb on - strandat 3567.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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3,565,680 + OHPLBJKB_03412 0.31 -0.2
3,565,680 + OHPLBJKB_03412 0.31 +1.2
3,565,680 + OHPLBJKB_03412 0.31 -0.0
3,565,680 + OHPLBJKB_03412 0.31 -2.2
3,565,680 + OHPLBJKB_03412 0.31 +0.1
3,565,680 + OHPLBJKB_03412 0.31 -0.5
3,565,680 + OHPLBJKB_03412 0.31 +0.6
3,565,680 + OHPLBJKB_03412 0.31 -1.1
3,565,681 - OHPLBJKB_03412 0.31 +0.8
3,565,681 - OHPLBJKB_03412 0.31 +0.4
3,565,681 - OHPLBJKB_03412 0.31 +0.9
3,565,681 - OHPLBJKB_03412 0.31 -0.3
3,565,681 - OHPLBJKB_03412 0.31 +0.4
3,565,681 - OHPLBJKB_03412 0.31 +0.1
3,565,681 - OHPLBJKB_03412 0.31 +0.3
3,565,681 - OHPLBJKB_03412 0.31 +0.3
3,565,729 - OHPLBJKB_03412 0.37 -0.2
3,565,729 - OHPLBJKB_03412 0.37 +1.3
3,565,729 - OHPLBJKB_03412 0.37 -1.0
3,565,734 + OHPLBJKB_03412 0.38 +0.8
3,565,735 - OHPLBJKB_03412 0.38 +0.5
3,565,735 - OHPLBJKB_03412 0.38 -1.3
3,565,742 + OHPLBJKB_03412 0.39 -0.7
3,565,792 - OHPLBJKB_03412 0.45 -0.6
3,565,843 + OHPLBJKB_03412 0.52 +0.2
3,565,843 + OHPLBJKB_03412 0.52 -0.8
3,565,843 + OHPLBJKB_03412 0.52 -2.0
3,565,844 - OHPLBJKB_03412 0.52 -0.7
3,565,946 + OHPLBJKB_03412 0.65 -0.0
3,565,947 - OHPLBJKB_03412 0.65 -0.0
3,566,005 + OHPLBJKB_03412 0.73 +0.4
3,566,005 + OHPLBJKB_03412 0.73 +0.5
3,566,006 - OHPLBJKB_03412 0.73 +0.1
3,566,007 + OHPLBJKB_03412 0.73 -0.1
3,566,007 + OHPLBJKB_03412 0.73 +0.8
3,566,007 + OHPLBJKB_03412 0.73 -0.3
3,566,007 + OHPLBJKB_03412 0.73 +0.6
3,566,007 + OHPLBJKB_03412 0.73 +0.2
3,566,008 - OHPLBJKB_03412 0.73 +0.2
3,566,008 - OHPLBJKB_03412 0.73 -0.1
3,566,008 - OHPLBJKB_03412 0.73 +0.4
3,566,008 - OHPLBJKB_03412 0.73 -0.5
3,566,008 - OHPLBJKB_03412 0.73 +0.7
3,566,098 + OHPLBJKB_03412 0.85 +0.2
3,566,098 + OHPLBJKB_03412 0.85 -0.5
3,566,099 - OHPLBJKB_03412 0.85 +0.6
3,566,099 - OHPLBJKB_03412 0.85 -1.8
3,566,150 + -1.1
3,566,191 + -0.4
3,566,191 + -0.5
3,566,191 + -0.8
3,566,192 - +0.2
3,566,230 - -1.1
3,566,256 - -0.6
3,566,267 - +0.4
3,566,280 + +0.9
3,566,285 - -1.1
3,566,295 + +2.0
3,566,299 + -0.4
3,566,320 + +1.4
3,566,374 + -0.0
3,566,374 + +0.4
3,566,380 + -0.1
3,566,570 + OHPLBJKB_03413 0.65 +0.7
3,566,616 + OHPLBJKB_03413 0.82 -0.9
3,566,711 - OHPLBJKB_03414 0.17 -0.9
3,566,745 - OHPLBJKB_03414 0.29 -1.1
3,566,754 + OHPLBJKB_03414 0.32 -1.3
3,566,755 - OHPLBJKB_03414 0.33 +0.7
3,566,760 - OHPLBJKB_03414 0.34 +0.3
3,566,772 - OHPLBJKB_03414 0.39 +0.2
3,566,802 + OHPLBJKB_03414 0.49 +0.6
3,567,032 + -0.3
3,567,097 + -0.9
3,567,098 - -0.4
3,567,098 - -0.9
3,567,103 + +1.0
3,567,103 + +0.5
3,567,115 - -2.2
3,567,172 + OHPLBJKB_03415 0.10 +0.3
3,567,172 + OHPLBJKB_03415 0.10 +0.4
3,567,173 - OHPLBJKB_03415 0.10 +0.7
3,567,200 + OHPLBJKB_03415 0.14 -0.3
3,567,200 + OHPLBJKB_03415 0.14 +0.5
3,567,200 + OHPLBJKB_03415 0.14 +0.0
3,567,201 - OHPLBJKB_03415 0.14 -1.1
3,567,202 + OHPLBJKB_03415 0.14 -0.2
3,567,202 + OHPLBJKB_03415 0.14 +1.0
3,567,202 + OHPLBJKB_03415 0.14 +0.6
3,567,202 + OHPLBJKB_03415 0.14 -0.7
3,567,202 + OHPLBJKB_03415 0.14 +0.3
3,567,202 + OHPLBJKB_03415 0.14 +1.4
3,567,203 - OHPLBJKB_03415 0.14 +0.6
3,567,230 + OHPLBJKB_03415 0.18 -0.1
3,567,256 + OHPLBJKB_03415 0.21 +0.2
3,567,256 + OHPLBJKB_03415 0.21 -0.3
3,567,257 - OHPLBJKB_03415 0.21 -0.1
3,567,257 - OHPLBJKB_03415 0.21 +0.3
3,567,269 + OHPLBJKB_03415 0.23 -0.2
3,567,269 + OHPLBJKB_03415 0.23 -0.7
3,567,310 + OHPLBJKB_03415 0.29 -1.4
3,567,319 + OHPLBJKB_03415 0.30 -0.5
3,567,323 + OHPLBJKB_03415 0.30 -0.8
3,567,384 - OHPLBJKB_03415 0.39 +0.2
3,567,384 - OHPLBJKB_03415 0.39 -0.7
3,567,384 - OHPLBJKB_03415 0.39 -0.4
3,567,405 + OHPLBJKB_03415 0.41 -0.2
3,567,425 + OHPLBJKB_03415 0.44 -1.1
3,567,425 + OHPLBJKB_03415 0.44 -0.6
3,567,425 + OHPLBJKB_03415 0.44 +0.1
3,567,426 - OHPLBJKB_03415 0.44 +0.2
3,567,426 - OHPLBJKB_03415 0.44 -0.2
3,567,439 + OHPLBJKB_03415 0.46 +0.9
3,567,458 + OHPLBJKB_03415 0.49 -0.2
3,567,458 + OHPLBJKB_03415 0.49 -0.5
3,567,459 - OHPLBJKB_03415 0.49 +0.3
3,567,476 + OHPLBJKB_03415 0.51 -0.3
3,567,617 + OHPLBJKB_03415 0.70 +0.3
3,567,618 - OHPLBJKB_03415 0.70 +0.4
3,567,640 + OHPLBJKB_03415 0.73 +0.8
3,567,644 - OHPLBJKB_03415 0.74 +0.1
3,567,644 - OHPLBJKB_03415 0.74 +1.5
3,567,670 + OHPLBJKB_03415 0.77 -0.4
3,567,758 + OHPLBJKB_03415 0.89 -0.6
3,567,758 + OHPLBJKB_03415 0.89 +0.7
3,567,815 + +0.4
3,567,816 - +1.3
3,567,816 - +0.2

Or see this region's nucleotide sequence