Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02750

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02748 and OHPLBJKB_02749 are separated by 153 nucleotidesOHPLBJKB_02749 and OHPLBJKB_02750 overlap by 4 nucleotidesOHPLBJKB_02750 and OHPLBJKB_02751 are separated by 51 nucleotides OHPLBJKB_02748: OHPLBJKB_02748 - hypothetical protein, at 2,869,656 to 2,870,549 _02748 OHPLBJKB_02749: OHPLBJKB_02749 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,870,703 to 2,871,449 _02749 OHPLBJKB_02750: OHPLBJKB_02750 - hypothetical protein, at 2,871,446 to 2,871,628 _02750 OHPLBJKB_02751: OHPLBJKB_02751 - hypothetical protein, at 2,871,680 to 2,872,912 _02751 Position (kb) 2871 2872Strain fitness (log2 ratio) -2 -1 0 1 2at 2870.449 kb on + strand, within OHPLBJKB_02748at 2870.449 kb on + strand, within OHPLBJKB_02748at 2870.449 kb on + strand, within OHPLBJKB_02748at 2870.495 kb on + strandat 2870.495 kb on + strandat 2870.527 kb on - strandat 2870.565 kb on - strandat 2870.595 kb on + strandat 2870.595 kb on + strandat 2870.597 kb on + strandat 2870.598 kb on - strandat 2870.598 kb on - strandat 2870.598 kb on - strandat 2870.659 kb on + strandat 2871.662 kb on - strandat 2871.681 kb on + strandat 2871.681 kb on + strandat 2871.682 kb on - strandat 2871.695 kb on + strandat 2871.696 kb on - strandat 2871.696 kb on - strandat 2871.746 kb on + strandat 2871.747 kb on - strandat 2871.800 kb on + strandat 2871.801 kb on - strandat 2871.801 kb on - strandat 2871.833 kb on - strand, within OHPLBJKB_02751at 2871.856 kb on + strand, within OHPLBJKB_02751at 2871.857 kb on - strand, within OHPLBJKB_02751at 2871.908 kb on + strand, within OHPLBJKB_02751at 2871.908 kb on + strand, within OHPLBJKB_02751at 2871.909 kb on - strand, within OHPLBJKB_02751at 2871.909 kb on - strand, within OHPLBJKB_02751at 2871.909 kb on - strand, within OHPLBJKB_02751at 2871.909 kb on - strand, within OHPLBJKB_02751at 2871.923 kb on + strand, within OHPLBJKB_02751at 2871.923 kb on + strand, within OHPLBJKB_02751at 2871.923 kb on + strand, within OHPLBJKB_02751at 2871.924 kb on - strand, within OHPLBJKB_02751at 2871.924 kb on - strand, within OHPLBJKB_02751at 2871.942 kb on + strand, within OHPLBJKB_02751at 2871.943 kb on - strand, within OHPLBJKB_02751at 2871.948 kb on + strand, within OHPLBJKB_02751at 2871.973 kb on - strand, within OHPLBJKB_02751at 2871.988 kb on - strand, within OHPLBJKB_02751at 2871.991 kb on + strand, within OHPLBJKB_02751at 2872.053 kb on - strand, within OHPLBJKB_02751at 2872.224 kb on + strand, within OHPLBJKB_02751at 2872.224 kb on + strand, within OHPLBJKB_02751at 2872.225 kb on - strand, within OHPLBJKB_02751at 2872.225 kb on - strand, within OHPLBJKB_02751at 2872.225 kb on - strand, within OHPLBJKB_02751at 2872.251 kb on - strand, within OHPLBJKB_02751at 2872.409 kb on - strand, within OHPLBJKB_02751at 2872.413 kb on - strand, within OHPLBJKB_02751at 2872.413 kb on - strand, within OHPLBJKB_02751at 2872.516 kb on + strand, within OHPLBJKB_02751at 2872.527 kb on - strand, within OHPLBJKB_02751at 2872.527 kb on - strand, within OHPLBJKB_02751

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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2,870,449 + OHPLBJKB_02748 0.89 +0.4
2,870,449 + OHPLBJKB_02748 0.89 +0.5
2,870,449 + OHPLBJKB_02748 0.89 +0.4
2,870,495 + -0.3
2,870,495 + -1.7
2,870,527 - +0.7
2,870,565 - +0.1
2,870,595 + +0.6
2,870,595 + +0.5
2,870,597 + +0.2
2,870,598 - -1.8
2,870,598 - +1.2
2,870,598 - -0.3
2,870,659 + -0.7
2,871,662 - +0.2
2,871,681 + +0.4
2,871,681 + +0.4
2,871,682 - +0.8
2,871,695 + -0.6
2,871,696 - +0.9
2,871,696 - -1.0
2,871,746 + +0.3
2,871,747 - +1.0
2,871,800 + +0.4
2,871,801 - +0.5
2,871,801 - +0.6
2,871,833 - OHPLBJKB_02751 0.12 -0.5
2,871,856 + OHPLBJKB_02751 0.14 +0.4
2,871,857 - OHPLBJKB_02751 0.14 +0.5
2,871,908 + OHPLBJKB_02751 0.18 +0.2
2,871,908 + OHPLBJKB_02751 0.18 +0.0
2,871,909 - OHPLBJKB_02751 0.19 +0.3
2,871,909 - OHPLBJKB_02751 0.19 -0.1
2,871,909 - OHPLBJKB_02751 0.19 +0.2
2,871,909 - OHPLBJKB_02751 0.19 -0.6
2,871,923 + OHPLBJKB_02751 0.20 -0.8
2,871,923 + OHPLBJKB_02751 0.20 -0.2
2,871,923 + OHPLBJKB_02751 0.20 +0.4
2,871,924 - OHPLBJKB_02751 0.20 -0.3
2,871,924 - OHPLBJKB_02751 0.20 +2.0
2,871,942 + OHPLBJKB_02751 0.21 +0.7
2,871,943 - OHPLBJKB_02751 0.21 +0.3
2,871,948 + OHPLBJKB_02751 0.22 +0.4
2,871,973 - OHPLBJKB_02751 0.24 +0.1
2,871,988 - OHPLBJKB_02751 0.25 +0.2
2,871,991 + OHPLBJKB_02751 0.25 +0.6
2,872,053 - OHPLBJKB_02751 0.30 -1.6
2,872,224 + OHPLBJKB_02751 0.44 -0.0
2,872,224 + OHPLBJKB_02751 0.44 +0.1
2,872,225 - OHPLBJKB_02751 0.44 +1.1
2,872,225 - OHPLBJKB_02751 0.44 -1.3
2,872,225 - OHPLBJKB_02751 0.44 +0.1
2,872,251 - OHPLBJKB_02751 0.46 +0.2
2,872,409 - OHPLBJKB_02751 0.59 +0.2
2,872,413 - OHPLBJKB_02751 0.59 -0.3
2,872,413 - OHPLBJKB_02751 0.59 -0.5
2,872,516 + OHPLBJKB_02751 0.68 +0.1
2,872,527 - OHPLBJKB_02751 0.69 -0.3
2,872,527 - OHPLBJKB_02751 0.69 -0.1

Or see this region's nucleotide sequence