Experiment: HB-P24 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02545 and OHPLBJKB_02546 are separated by 136 nucleotides OHPLBJKB_02546 and OHPLBJKB_02547 are separated by 15 nucleotides OHPLBJKB_02547 and OHPLBJKB_02548 are separated by 28 nucleotides
OHPLBJKB_02545: OHPLBJKB_02545 - Spermidine/putrescine-binding periplasmic protein, at 2,657,396 to 2,658,442
_02545
OHPLBJKB_02546: OHPLBJKB_02546 - NAD-dependent protein deacylase, at 2,658,579 to 2,659,418
_02546
OHPLBJKB_02547: OHPLBJKB_02547 - N-acetyl-D-glucosamine kinase, at 2,659,434 to 2,660,345
_02547
OHPLBJKB_02548: OHPLBJKB_02548 - Lipoprotein-releasing system transmembrane protein LolE, at 2,660,374 to 2,661,612
_02548
Position (kb)
2659
2660
2661 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2658.441 kb on - strand at 2658.522 kb on + strand at 2658.601 kb on - strand at 2658.815 kb on + strand, within OHPLBJKB_02546 at 2658.858 kb on + strand, within OHPLBJKB_02546 at 2658.858 kb on + strand, within OHPLBJKB_02546 at 2658.859 kb on - strand, within OHPLBJKB_02546 at 2658.859 kb on - strand, within OHPLBJKB_02546 at 2658.859 kb on - strand, within OHPLBJKB_02546 at 2658.902 kb on + strand, within OHPLBJKB_02546 at 2658.983 kb on + strand, within OHPLBJKB_02546 at 2658.983 kb on + strand, within OHPLBJKB_02546 at 2659.002 kb on - strand, within OHPLBJKB_02546 at 2659.002 kb on - strand, within OHPLBJKB_02546 at 2659.245 kb on - strand, within OHPLBJKB_02546 at 2659.250 kb on + strand, within OHPLBJKB_02546 at 2659.290 kb on + strand, within OHPLBJKB_02546 at 2659.325 kb on + strand, within OHPLBJKB_02546 at 2659.325 kb on + strand, within OHPLBJKB_02546 at 2659.393 kb on - strand at 2659.418 kb on + strand at 2659.419 kb on - strand at 2659.419 kb on - strand at 2659.444 kb on - strand at 2659.444 kb on - strand at 2659.449 kb on + strand at 2659.449 kb on + strand at 2659.450 kb on - strand at 2659.450 kb on - strand at 2659.629 kb on - strand, within OHPLBJKB_02547 at 2659.713 kb on - strand, within OHPLBJKB_02547 at 2659.741 kb on + strand, within OHPLBJKB_02547 at 2659.741 kb on + strand, within OHPLBJKB_02547 at 2659.742 kb on - strand, within OHPLBJKB_02547 at 2659.742 kb on - strand, within OHPLBJKB_02547 at 2659.742 kb on - strand, within OHPLBJKB_02547 at 2659.744 kb on + strand, within OHPLBJKB_02547 at 2659.744 kb on + strand, within OHPLBJKB_02547 at 2659.744 kb on + strand, within OHPLBJKB_02547 at 2659.744 kb on + strand, within OHPLBJKB_02547 at 2659.744 kb on + strand, within OHPLBJKB_02547 at 2659.745 kb on - strand, within OHPLBJKB_02547 at 2659.754 kb on - strand, within OHPLBJKB_02547 at 2659.754 kb on - strand, within OHPLBJKB_02547 at 2659.897 kb on + strand, within OHPLBJKB_02547 at 2659.897 kb on + strand, within OHPLBJKB_02547 at 2659.898 kb on - strand, within OHPLBJKB_02547 at 2659.898 kb on - strand, within OHPLBJKB_02547 at 2660.046 kb on + strand, within OHPLBJKB_02547 at 2660.046 kb on + strand, within OHPLBJKB_02547 at 2660.047 kb on - strand, within OHPLBJKB_02547 at 2660.177 kb on + strand, within OHPLBJKB_02547 at 2660.177 kb on + strand, within OHPLBJKB_02547 at 2660.226 kb on + strand, within OHPLBJKB_02547 at 2660.227 kb on - strand, within OHPLBJKB_02547 at 2660.239 kb on + strand, within OHPLBJKB_02547 at 2660.239 kb on + strand, within OHPLBJKB_02547 at 2660.239 kb on + strand, within OHPLBJKB_02547 at 2660.240 kb on - strand, within OHPLBJKB_02547 at 2660.240 kb on - strand, within OHPLBJKB_02547 at 2660.240 kb on - strand, within OHPLBJKB_02547 at 2660.240 kb on - strand, within OHPLBJKB_02547 at 2660.240 kb on - strand, within OHPLBJKB_02547 at 2660.341 kb on + strand at 2660.342 kb on - strand at 2660.361 kb on + strand at 2660.361 kb on + strand at 2660.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HB-P24 MOI10 remove 2,658,441 - -1.3 2,658,522 + -0.2 2,658,601 - -0.3 2,658,815 + OHPLBJKB_02546 0.28 -0.8 2,658,858 + OHPLBJKB_02546 0.33 +0.4 2,658,858 + OHPLBJKB_02546 0.33 -0.6 2,658,859 - OHPLBJKB_02546 0.33 +0.6 2,658,859 - OHPLBJKB_02546 0.33 +0.4 2,658,859 - OHPLBJKB_02546 0.33 +1.2 2,658,902 + OHPLBJKB_02546 0.38 +0.8 2,658,983 + OHPLBJKB_02546 0.48 -0.6 2,658,983 + OHPLBJKB_02546 0.48 -0.6 2,659,002 - OHPLBJKB_02546 0.50 +0.4 2,659,002 - OHPLBJKB_02546 0.50 -0.7 2,659,245 - OHPLBJKB_02546 0.79 +0.8 2,659,250 + OHPLBJKB_02546 0.80 +1.3 2,659,290 + OHPLBJKB_02546 0.85 +1.8 2,659,325 + OHPLBJKB_02546 0.89 +0.1 2,659,325 + OHPLBJKB_02546 0.89 -0.1 2,659,393 - -1.0 2,659,418 + +1.0 2,659,419 - -0.3 2,659,419 - -0.1 2,659,444 - +0.3 2,659,444 - -0.2 2,659,449 + +0.6 2,659,449 + +1.1 2,659,450 - -1.0 2,659,450 - +0.2 2,659,629 - OHPLBJKB_02547 0.21 +0.4 2,659,713 - OHPLBJKB_02547 0.31 +0.3 2,659,741 + OHPLBJKB_02547 0.34 +0.9 2,659,741 + OHPLBJKB_02547 0.34 -0.4 2,659,742 - OHPLBJKB_02547 0.34 +0.4 2,659,742 - OHPLBJKB_02547 0.34 +0.1 2,659,742 - OHPLBJKB_02547 0.34 -0.2 2,659,744 + OHPLBJKB_02547 0.34 -0.6 2,659,744 + OHPLBJKB_02547 0.34 -0.6 2,659,744 + OHPLBJKB_02547 0.34 -0.4 2,659,744 + OHPLBJKB_02547 0.34 -1.3 2,659,744 + OHPLBJKB_02547 0.34 +0.3 2,659,745 - OHPLBJKB_02547 0.34 +1.1 2,659,754 - OHPLBJKB_02547 0.35 -0.0 2,659,754 - OHPLBJKB_02547 0.35 +1.3 2,659,897 + OHPLBJKB_02547 0.51 +0.2 2,659,897 + OHPLBJKB_02547 0.51 +0.3 2,659,898 - OHPLBJKB_02547 0.51 -1.2 2,659,898 - OHPLBJKB_02547 0.51 +0.4 2,660,046 + OHPLBJKB_02547 0.67 +1.0 2,660,046 + OHPLBJKB_02547 0.67 +1.0 2,660,047 - OHPLBJKB_02547 0.67 -0.2 2,660,177 + OHPLBJKB_02547 0.81 +2.3 2,660,177 + OHPLBJKB_02547 0.81 -0.4 2,660,226 + OHPLBJKB_02547 0.87 +0.5 2,660,227 - OHPLBJKB_02547 0.87 +0.8 2,660,239 + OHPLBJKB_02547 0.88 +1.5 2,660,239 + OHPLBJKB_02547 0.88 -1.9 2,660,239 + OHPLBJKB_02547 0.88 +0.6 2,660,240 - OHPLBJKB_02547 0.88 -0.0 2,660,240 - OHPLBJKB_02547 0.88 -0.1 2,660,240 - OHPLBJKB_02547 0.88 -0.2 2,660,240 - OHPLBJKB_02547 0.88 -0.3 2,660,240 - OHPLBJKB_02547 0.88 -0.2 2,660,341 + -0.8 2,660,342 - +0.6 2,660,361 + -1.4 2,660,361 + +1.1 2,660,367 - -0.6
Or see this region's nucleotide sequence