Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02547

Experiment: HB-P24 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02545 and OHPLBJKB_02546 are separated by 136 nucleotidesOHPLBJKB_02546 and OHPLBJKB_02547 are separated by 15 nucleotidesOHPLBJKB_02547 and OHPLBJKB_02548 are separated by 28 nucleotides OHPLBJKB_02545: OHPLBJKB_02545 - Spermidine/putrescine-binding periplasmic protein, at 2,657,396 to 2,658,442 _02545 OHPLBJKB_02546: OHPLBJKB_02546 - NAD-dependent protein deacylase, at 2,658,579 to 2,659,418 _02546 OHPLBJKB_02547: OHPLBJKB_02547 - N-acetyl-D-glucosamine kinase, at 2,659,434 to 2,660,345 _02547 OHPLBJKB_02548: OHPLBJKB_02548 - Lipoprotein-releasing system transmembrane protein LolE, at 2,660,374 to 2,661,612 _02548 Position (kb) 2659 2660 2661Strain fitness (log2 ratio) -2 -1 0 1 2at 2658.441 kb on - strandat 2658.522 kb on + strandat 2658.601 kb on - strandat 2658.815 kb on + strand, within OHPLBJKB_02546at 2658.858 kb on + strand, within OHPLBJKB_02546at 2658.858 kb on + strand, within OHPLBJKB_02546at 2658.859 kb on - strand, within OHPLBJKB_02546at 2658.859 kb on - strand, within OHPLBJKB_02546at 2658.859 kb on - strand, within OHPLBJKB_02546at 2658.902 kb on + strand, within OHPLBJKB_02546at 2658.983 kb on + strand, within OHPLBJKB_02546at 2658.983 kb on + strand, within OHPLBJKB_02546at 2659.002 kb on - strand, within OHPLBJKB_02546at 2659.002 kb on - strand, within OHPLBJKB_02546at 2659.245 kb on - strand, within OHPLBJKB_02546at 2659.250 kb on + strand, within OHPLBJKB_02546at 2659.290 kb on + strand, within OHPLBJKB_02546at 2659.325 kb on + strand, within OHPLBJKB_02546at 2659.325 kb on + strand, within OHPLBJKB_02546at 2659.393 kb on - strandat 2659.418 kb on + strandat 2659.419 kb on - strandat 2659.419 kb on - strandat 2659.444 kb on - strandat 2659.444 kb on - strandat 2659.449 kb on + strandat 2659.449 kb on + strandat 2659.450 kb on - strandat 2659.450 kb on - strandat 2659.629 kb on - strand, within OHPLBJKB_02547at 2659.713 kb on - strand, within OHPLBJKB_02547at 2659.741 kb on + strand, within OHPLBJKB_02547at 2659.741 kb on + strand, within OHPLBJKB_02547at 2659.742 kb on - strand, within OHPLBJKB_02547at 2659.742 kb on - strand, within OHPLBJKB_02547at 2659.742 kb on - strand, within OHPLBJKB_02547at 2659.744 kb on + strand, within OHPLBJKB_02547at 2659.744 kb on + strand, within OHPLBJKB_02547at 2659.744 kb on + strand, within OHPLBJKB_02547at 2659.744 kb on + strand, within OHPLBJKB_02547at 2659.744 kb on + strand, within OHPLBJKB_02547at 2659.745 kb on - strand, within OHPLBJKB_02547at 2659.754 kb on - strand, within OHPLBJKB_02547at 2659.754 kb on - strand, within OHPLBJKB_02547at 2659.897 kb on + strand, within OHPLBJKB_02547at 2659.897 kb on + strand, within OHPLBJKB_02547at 2659.898 kb on - strand, within OHPLBJKB_02547at 2659.898 kb on - strand, within OHPLBJKB_02547at 2660.046 kb on + strand, within OHPLBJKB_02547at 2660.046 kb on + strand, within OHPLBJKB_02547at 2660.047 kb on - strand, within OHPLBJKB_02547at 2660.177 kb on + strand, within OHPLBJKB_02547at 2660.177 kb on + strand, within OHPLBJKB_02547at 2660.226 kb on + strand, within OHPLBJKB_02547at 2660.227 kb on - strand, within OHPLBJKB_02547at 2660.239 kb on + strand, within OHPLBJKB_02547at 2660.239 kb on + strand, within OHPLBJKB_02547at 2660.239 kb on + strand, within OHPLBJKB_02547at 2660.240 kb on - strand, within OHPLBJKB_02547at 2660.240 kb on - strand, within OHPLBJKB_02547at 2660.240 kb on - strand, within OHPLBJKB_02547at 2660.240 kb on - strand, within OHPLBJKB_02547at 2660.240 kb on - strand, within OHPLBJKB_02547at 2660.341 kb on + strandat 2660.342 kb on - strandat 2660.361 kb on + strandat 2660.361 kb on + strandat 2660.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P24 MOI10
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2,658,441 - -1.3
2,658,522 + -0.2
2,658,601 - -0.3
2,658,815 + OHPLBJKB_02546 0.28 -0.8
2,658,858 + OHPLBJKB_02546 0.33 +0.4
2,658,858 + OHPLBJKB_02546 0.33 -0.6
2,658,859 - OHPLBJKB_02546 0.33 +0.6
2,658,859 - OHPLBJKB_02546 0.33 +0.4
2,658,859 - OHPLBJKB_02546 0.33 +1.2
2,658,902 + OHPLBJKB_02546 0.38 +0.8
2,658,983 + OHPLBJKB_02546 0.48 -0.6
2,658,983 + OHPLBJKB_02546 0.48 -0.6
2,659,002 - OHPLBJKB_02546 0.50 +0.4
2,659,002 - OHPLBJKB_02546 0.50 -0.7
2,659,245 - OHPLBJKB_02546 0.79 +0.8
2,659,250 + OHPLBJKB_02546 0.80 +1.3
2,659,290 + OHPLBJKB_02546 0.85 +1.8
2,659,325 + OHPLBJKB_02546 0.89 +0.1
2,659,325 + OHPLBJKB_02546 0.89 -0.1
2,659,393 - -1.0
2,659,418 + +1.0
2,659,419 - -0.3
2,659,419 - -0.1
2,659,444 - +0.3
2,659,444 - -0.2
2,659,449 + +0.6
2,659,449 + +1.1
2,659,450 - -1.0
2,659,450 - +0.2
2,659,629 - OHPLBJKB_02547 0.21 +0.4
2,659,713 - OHPLBJKB_02547 0.31 +0.3
2,659,741 + OHPLBJKB_02547 0.34 +0.9
2,659,741 + OHPLBJKB_02547 0.34 -0.4
2,659,742 - OHPLBJKB_02547 0.34 +0.4
2,659,742 - OHPLBJKB_02547 0.34 +0.1
2,659,742 - OHPLBJKB_02547 0.34 -0.2
2,659,744 + OHPLBJKB_02547 0.34 -0.6
2,659,744 + OHPLBJKB_02547 0.34 -0.6
2,659,744 + OHPLBJKB_02547 0.34 -0.4
2,659,744 + OHPLBJKB_02547 0.34 -1.3
2,659,744 + OHPLBJKB_02547 0.34 +0.3
2,659,745 - OHPLBJKB_02547 0.34 +1.1
2,659,754 - OHPLBJKB_02547 0.35 -0.0
2,659,754 - OHPLBJKB_02547 0.35 +1.3
2,659,897 + OHPLBJKB_02547 0.51 +0.2
2,659,897 + OHPLBJKB_02547 0.51 +0.3
2,659,898 - OHPLBJKB_02547 0.51 -1.2
2,659,898 - OHPLBJKB_02547 0.51 +0.4
2,660,046 + OHPLBJKB_02547 0.67 +1.0
2,660,046 + OHPLBJKB_02547 0.67 +1.0
2,660,047 - OHPLBJKB_02547 0.67 -0.2
2,660,177 + OHPLBJKB_02547 0.81 +2.3
2,660,177 + OHPLBJKB_02547 0.81 -0.4
2,660,226 + OHPLBJKB_02547 0.87 +0.5
2,660,227 - OHPLBJKB_02547 0.87 +0.8
2,660,239 + OHPLBJKB_02547 0.88 +1.5
2,660,239 + OHPLBJKB_02547 0.88 -1.9
2,660,239 + OHPLBJKB_02547 0.88 +0.6
2,660,240 - OHPLBJKB_02547 0.88 -0.0
2,660,240 - OHPLBJKB_02547 0.88 -0.1
2,660,240 - OHPLBJKB_02547 0.88 -0.2
2,660,240 - OHPLBJKB_02547 0.88 -0.3
2,660,240 - OHPLBJKB_02547 0.88 -0.2
2,660,341 + -0.8
2,660,342 - +0.6
2,660,361 + -1.4
2,660,361 + +1.1
2,660,367 - -0.6

Or see this region's nucleotide sequence