Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00577

Experiment: HB-P22 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00576 and OHPLBJKB_00577 are separated by 15 nucleotidesOHPLBJKB_00577 and OHPLBJKB_00578 are separated by 29 nucleotides OHPLBJKB_00576: OHPLBJKB_00576 - putative galactarate transporter, at 587,374 to 588,708 _00576 OHPLBJKB_00577: OHPLBJKB_00577 - 5-keto-4-deoxy-D-glucarate aldolase, at 588,724 to 589,494 _00577 OHPLBJKB_00578: OHPLBJKB_00578 - 2-hydroxy-3-oxopropionate reductase, at 589,524 to 590,414 _00578 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1 2at 587.733 kb on + strand, within OHPLBJKB_00576at 587.734 kb on - strand, within OHPLBJKB_00576at 587.845 kb on + strand, within OHPLBJKB_00576at 587.994 kb on + strand, within OHPLBJKB_00576at 587.994 kb on + strand, within OHPLBJKB_00576at 587.994 kb on + strand, within OHPLBJKB_00576at 587.994 kb on + strand, within OHPLBJKB_00576at 587.994 kb on + strand, within OHPLBJKB_00576at 587.994 kb on + strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 587.995 kb on - strand, within OHPLBJKB_00576at 588.019 kb on - strand, within OHPLBJKB_00576at 588.097 kb on + strand, within OHPLBJKB_00576at 588.097 kb on + strand, within OHPLBJKB_00576at 588.097 kb on + strand, within OHPLBJKB_00576at 588.097 kb on + strand, within OHPLBJKB_00576at 588.098 kb on - strand, within OHPLBJKB_00576at 588.098 kb on - strand, within OHPLBJKB_00576at 588.098 kb on - strand, within OHPLBJKB_00576at 588.152 kb on - strand, within OHPLBJKB_00576at 588.156 kb on + strand, within OHPLBJKB_00576at 588.200 kb on - strand, within OHPLBJKB_00576at 588.345 kb on + strand, within OHPLBJKB_00576at 588.345 kb on + strand, within OHPLBJKB_00576at 588.346 kb on - strand, within OHPLBJKB_00576at 588.346 kb on - strand, within OHPLBJKB_00576at 588.346 kb on - strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.392 kb on + strand, within OHPLBJKB_00576at 588.393 kb on - strand, within OHPLBJKB_00576at 588.393 kb on - strand, within OHPLBJKB_00576at 588.393 kb on - strand, within OHPLBJKB_00576at 588.393 kb on - strand, within OHPLBJKB_00576at 588.393 kb on - strand, within OHPLBJKB_00576at 588.396 kb on + strand, within OHPLBJKB_00576at 588.396 kb on + strand, within OHPLBJKB_00576at 588.396 kb on + strand, within OHPLBJKB_00576at 588.397 kb on - strand, within OHPLBJKB_00576at 588.397 kb on - strand, within OHPLBJKB_00576at 588.397 kb on - strand, within OHPLBJKB_00576at 588.400 kb on + strand, within OHPLBJKB_00576at 588.400 kb on + strand, within OHPLBJKB_00576at 588.401 kb on - strand, within OHPLBJKB_00576at 588.584 kb on - strandat 588.591 kb on - strandat 588.671 kb on + strandat 588.672 kb on - strandat 588.672 kb on - strandat 588.685 kb on - strandat 588.690 kb on + strandat 588.690 kb on + strandat 588.707 kb on - strandat 588.707 kb on - strandat 588.716 kb on + strandat 588.716 kb on + strandat 588.719 kb on - strandat 588.748 kb on - strandat 588.885 kb on + strand, within OHPLBJKB_00577at 588.886 kb on - strand, within OHPLBJKB_00577at 588.972 kb on + strand, within OHPLBJKB_00577at 589.001 kb on - strand, within OHPLBJKB_00577at 589.001 kb on - strand, within OHPLBJKB_00577at 589.022 kb on + strand, within OHPLBJKB_00577at 589.114 kb on - strand, within OHPLBJKB_00577at 589.114 kb on - strand, within OHPLBJKB_00577at 589.114 kb on - strand, within OHPLBJKB_00577at 589.164 kb on + strand, within OHPLBJKB_00577at 589.164 kb on + strand, within OHPLBJKB_00577at 589.164 kb on + strand, within OHPLBJKB_00577at 589.165 kb on - strand, within OHPLBJKB_00577at 589.165 kb on - strand, within OHPLBJKB_00577at 589.179 kb on - strand, within OHPLBJKB_00577at 589.197 kb on - strand, within OHPLBJKB_00577at 589.197 kb on - strand, within OHPLBJKB_00577at 589.197 kb on - strand, within OHPLBJKB_00577at 589.233 kb on - strand, within OHPLBJKB_00577at 589.233 kb on - strand, within OHPLBJKB_00577at 589.479 kb on + strandat 589.523 kb on + strandat 589.634 kb on + strand, within OHPLBJKB_00578at 589.712 kb on - strand, within OHPLBJKB_00578at 589.790 kb on + strand, within OHPLBJKB_00578at 589.871 kb on + strand, within OHPLBJKB_00578at 589.871 kb on + strand, within OHPLBJKB_00578at 589.871 kb on + strand, within OHPLBJKB_00578at 589.872 kb on - strand, within OHPLBJKB_00578at 589.965 kb on + strand, within OHPLBJKB_00578at 589.965 kb on + strand, within OHPLBJKB_00578at 589.965 kb on + strand, within OHPLBJKB_00578at 589.966 kb on - strand, within OHPLBJKB_00578at 589.966 kb on - strand, within OHPLBJKB_00578at 589.969 kb on - strand, within OHPLBJKB_00578at 590.007 kb on - strand, within OHPLBJKB_00578at 590.070 kb on - strand, within OHPLBJKB_00578at 590.105 kb on + strand, within OHPLBJKB_00578at 590.105 kb on + strand, within OHPLBJKB_00578at 590.106 kb on - strand, within OHPLBJKB_00578at 590.237 kb on + strand, within OHPLBJKB_00578at 590.237 kb on + strand, within OHPLBJKB_00578at 590.238 kb on - strand, within OHPLBJKB_00578at 590.238 kb on - strand, within OHPLBJKB_00578at 590.240 kb on + strand, within OHPLBJKB_00578at 590.240 kb on + strand, within OHPLBJKB_00578at 590.241 kb on - strand, within OHPLBJKB_00578at 590.241 kb on - strand, within OHPLBJKB_00578at 590.264 kb on + strand, within OHPLBJKB_00578at 590.264 kb on + strand, within OHPLBJKB_00578at 590.265 kb on - strand, within OHPLBJKB_00578at 590.265 kb on - strand, within OHPLBJKB_00578at 590.360 kb on + strandat 590.406 kb on - strandat 590.406 kb on - strandat 590.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HB-P22 MOI1
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587,733 + OHPLBJKB_00576 0.27 -1.8
587,734 - OHPLBJKB_00576 0.27 +0.6
587,845 + OHPLBJKB_00576 0.35 +0.2
587,994 + OHPLBJKB_00576 0.46 +0.7
587,994 + OHPLBJKB_00576 0.46 -0.5
587,994 + OHPLBJKB_00576 0.46 -0.5
587,994 + OHPLBJKB_00576 0.46 +0.6
587,994 + OHPLBJKB_00576 0.46 -0.7
587,994 + OHPLBJKB_00576 0.46 +0.2
587,995 - OHPLBJKB_00576 0.47 +0.7
587,995 - OHPLBJKB_00576 0.47 +2.1
587,995 - OHPLBJKB_00576 0.47 +0.2
587,995 - OHPLBJKB_00576 0.47 +2.1
587,995 - OHPLBJKB_00576 0.47 -0.6
587,995 - OHPLBJKB_00576 0.47 -1.2
587,995 - OHPLBJKB_00576 0.47 +2.0
587,995 - OHPLBJKB_00576 0.47 -1.7
587,995 - OHPLBJKB_00576 0.47 -0.0
588,019 - OHPLBJKB_00576 0.48 -0.5
588,097 + OHPLBJKB_00576 0.54 -0.8
588,097 + OHPLBJKB_00576 0.54 +0.4
588,097 + OHPLBJKB_00576 0.54 +1.7
588,097 + OHPLBJKB_00576 0.54 +1.1
588,098 - OHPLBJKB_00576 0.54 -1.8
588,098 - OHPLBJKB_00576 0.54 +1.0
588,098 - OHPLBJKB_00576 0.54 +1.1
588,152 - OHPLBJKB_00576 0.58 +1.0
588,156 + OHPLBJKB_00576 0.59 +1.2
588,200 - OHPLBJKB_00576 0.62 -1.6
588,345 + OHPLBJKB_00576 0.73 +1.8
588,345 + OHPLBJKB_00576 0.73 +0.1
588,346 - OHPLBJKB_00576 0.73 +0.4
588,346 - OHPLBJKB_00576 0.73 +0.4
588,346 - OHPLBJKB_00576 0.73 +0.8
588,392 + OHPLBJKB_00576 0.76 -1.1
588,392 + OHPLBJKB_00576 0.76 -0.1
588,392 + OHPLBJKB_00576 0.76 -1.8
588,392 + OHPLBJKB_00576 0.76 -2.6
588,392 + OHPLBJKB_00576 0.76 -0.5
588,392 + OHPLBJKB_00576 0.76 -0.5
588,392 + OHPLBJKB_00576 0.76 -2.0
588,393 - OHPLBJKB_00576 0.76 +0.5
588,393 - OHPLBJKB_00576 0.76 -1.5
588,393 - OHPLBJKB_00576 0.76 +0.7
588,393 - OHPLBJKB_00576 0.76 +1.2
588,393 - OHPLBJKB_00576 0.76 -0.8
588,396 + OHPLBJKB_00576 0.77 -1.9
588,396 + OHPLBJKB_00576 0.77 +1.4
588,396 + OHPLBJKB_00576 0.77 -1.7
588,397 - OHPLBJKB_00576 0.77 +0.5
588,397 - OHPLBJKB_00576 0.77 -1.0
588,397 - OHPLBJKB_00576 0.77 +0.5
588,400 + OHPLBJKB_00576 0.77 -1.9
588,400 + OHPLBJKB_00576 0.77 +0.8
588,401 - OHPLBJKB_00576 0.77 -0.5
588,584 - +0.4
588,591 - -2.3
588,671 + -2.1
588,672 - -1.4
588,672 - +0.6
588,685 - +1.5
588,690 + -1.1
588,690 + -0.8
588,707 - +0.6
588,707 - +0.7
588,716 + +0.3
588,716 + -0.2
588,719 - -0.8
588,748 - +0.4
588,885 + OHPLBJKB_00577 0.21 +1.8
588,886 - OHPLBJKB_00577 0.21 +1.1
588,972 + OHPLBJKB_00577 0.32 +0.7
589,001 - OHPLBJKB_00577 0.36 -0.6
589,001 - OHPLBJKB_00577 0.36 -0.7
589,022 + OHPLBJKB_00577 0.39 +0.1
589,114 - OHPLBJKB_00577 0.51 -0.3
589,114 - OHPLBJKB_00577 0.51 -0.1
589,114 - OHPLBJKB_00577 0.51 +1.6
589,164 + OHPLBJKB_00577 0.57 -1.1
589,164 + OHPLBJKB_00577 0.57 +1.6
589,164 + OHPLBJKB_00577 0.57 +1.7
589,165 - OHPLBJKB_00577 0.57 +1.6
589,165 - OHPLBJKB_00577 0.57 -0.3
589,179 - OHPLBJKB_00577 0.59 -0.5
589,197 - OHPLBJKB_00577 0.61 -0.5
589,197 - OHPLBJKB_00577 0.61 -1.1
589,197 - OHPLBJKB_00577 0.61 -0.2
589,233 - OHPLBJKB_00577 0.66 -1.0
589,233 - OHPLBJKB_00577 0.66 +2.1
589,479 + -1.6
589,523 + +0.4
589,634 + OHPLBJKB_00578 0.12 +1.7
589,712 - OHPLBJKB_00578 0.21 +0.1
589,790 + OHPLBJKB_00578 0.30 -1.1
589,871 + OHPLBJKB_00578 0.39 -2.0
589,871 + OHPLBJKB_00578 0.39 +0.6
589,871 + OHPLBJKB_00578 0.39 +0.1
589,872 - OHPLBJKB_00578 0.39 -0.5
589,965 + OHPLBJKB_00578 0.49 -0.2
589,965 + OHPLBJKB_00578 0.49 -0.2
589,965 + OHPLBJKB_00578 0.49 -0.7
589,966 - OHPLBJKB_00578 0.50 -0.5
589,966 - OHPLBJKB_00578 0.50 +2.4
589,969 - OHPLBJKB_00578 0.50 +0.7
590,007 - OHPLBJKB_00578 0.54 +0.1
590,070 - OHPLBJKB_00578 0.61 -1.0
590,105 + OHPLBJKB_00578 0.65 +0.7
590,105 + OHPLBJKB_00578 0.65 +1.5
590,106 - OHPLBJKB_00578 0.65 +2.0
590,237 + OHPLBJKB_00578 0.80 -0.3
590,237 + OHPLBJKB_00578 0.80 -0.6
590,238 - OHPLBJKB_00578 0.80 -0.5
590,238 - OHPLBJKB_00578 0.80 -0.6
590,240 + OHPLBJKB_00578 0.80 -2.3
590,240 + OHPLBJKB_00578 0.80 +2.3
590,241 - OHPLBJKB_00578 0.80 +1.0
590,241 - OHPLBJKB_00578 0.80 +1.5
590,264 + OHPLBJKB_00578 0.83 -2.6
590,264 + OHPLBJKB_00578 0.83 -0.5
590,265 - OHPLBJKB_00578 0.83 -0.8
590,265 - OHPLBJKB_00578 0.83 +0.5
590,360 + -0.3
590,406 - +0.5
590,406 - +0.1
590,468 + +1.4

Or see this region's nucleotide sequence