Strain Fitness in Methylophilus sp. DMC18 around GFF85

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF84 and GFF85 are separated by 216 nucleotidesGFF85 and GFF86 are separated by 39 nucleotidesGFF86 and GFF87 are separated by 51 nucleotides GFF84 - hypothetical protein, at 96,103 to 97,197 GFF84 GFF85 - hypothetical protein, at 97,414 to 98,262 GFF85 GFF86 - hypothetical protein, at 98,302 to 98,781 GFF86 GFF87 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 98,833 to 99,213 GFF87 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 96.417 kb on + strand, within GFF84at 96.418 kb on - strand, within GFF84at 96.584 kb on - strand, within GFF84at 96.584 kb on - strand, within GFF84at 96.588 kb on + strand, within GFF84at 96.588 kb on + strand, within GFF84at 96.588 kb on + strand, within GFF84at 96.588 kb on + strand, within GFF84at 96.589 kb on - strand, within GFF84at 96.589 kb on - strand, within GFF84at 96.610 kb on + strand, within GFF84at 96.632 kb on + strand, within GFF84at 96.632 kb on + strand, within GFF84at 96.632 kb on + strand, within GFF84at 96.632 kb on + strand, within GFF84at 96.632 kb on + strand, within GFF84at 96.633 kb on - strand, within GFF84at 96.633 kb on - strand, within GFF84at 96.633 kb on - strand, within GFF84at 96.633 kb on - strand, within GFF84at 96.765 kb on - strand, within GFF84at 96.765 kb on - strand, within GFF84at 96.821 kb on + strand, within GFF84at 96.909 kb on + strand, within GFF84at 96.911 kb on + strand, within GFF84at 96.911 kb on + strand, within GFF84at 96.980 kb on + strand, within GFF84at 96.980 kb on + strand, within GFF84at 96.987 kb on + strand, within GFF84at 97.018 kb on + strand, within GFF84at 97.018 kb on + strand, within GFF84at 97.019 kb on - strand, within GFF84at 97.067 kb on + strand, within GFF84at 97.108 kb on + strandat 97.234 kb on + strandat 97.234 kb on + strandat 97.260 kb on + strandat 97.260 kb on + strandat 97.261 kb on - strandat 97.269 kb on - strandat 97.273 kb on + strandat 97.274 kb on - strandat 97.336 kb on + strandat 97.336 kb on + strandat 97.336 kb on + strandat 97.386 kb on + strandat 97.386 kb on + strandat 97.445 kb on + strandat 97.446 kb on - strandat 97.455 kb on - strandat 97.525 kb on + strand, within GFF85at 97.525 kb on + strand, within GFF85at 97.545 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.608 kb on + strand, within GFF85at 97.609 kb on - strand, within GFF85at 97.614 kb on + strand, within GFF85at 97.682 kb on + strand, within GFF85at 97.833 kb on + strand, within GFF85at 97.834 kb on - strand, within GFF85at 97.839 kb on + strand, within GFF85at 97.840 kb on - strand, within GFF85at 97.863 kb on + strand, within GFF85at 97.863 kb on + strand, within GFF85at 97.863 kb on + strand, within GFF85at 97.864 kb on - strand, within GFF85at 97.864 kb on - strand, within GFF85at 97.875 kb on - strand, within GFF85at 97.908 kb on + strand, within GFF85at 97.908 kb on + strand, within GFF85at 97.909 kb on - strand, within GFF85at 97.909 kb on - strand, within GFF85at 98.005 kb on + strand, within GFF85at 98.006 kb on - strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.088 kb on + strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.089 kb on - strand, within GFF85at 98.136 kb on + strand, within GFF85at 98.136 kb on + strand, within GFF85at 98.137 kb on - strand, within GFF85at 98.213 kb on + strandat 98.213 kb on + strandat 98.213 kb on + strandat 98.304 kb on - strandat 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.432 kb on + strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.433 kb on - strand, within GFF86at 98.486 kb on + strand, within GFF86at 98.487 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.499 kb on - strand, within GFF86at 98.520 kb on + strand, within GFF86at 98.520 kb on + strand, within GFF86at 98.521 kb on - strand, within GFF86at 98.639 kb on + strand, within GFF86at 98.639 kb on + strand, within GFF86at 98.640 kb on - strand, within GFF86at 98.640 kb on - strand, within GFF86at 98.640 kb on - strand, within GFF86at 98.643 kb on + strand, within GFF86at 98.644 kb on - strand, within GFF86at 98.654 kb on - strand, within GFF86at 98.660 kb on + strand, within GFF86at 98.660 kb on + strand, within GFF86at 98.661 kb on - strand, within GFF86at 98.661 kb on - strand, within GFF86at 98.750 kb on + strandat 98.750 kb on + strandat 98.750 kb on + strandat 98.750 kb on + strandat 98.750 kb on + strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.751 kb on - strandat 98.758 kb on + strandat 98.830 kb on + strandat 98.831 kb on - strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.834 kb on + strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 98.835 kb on - strandat 99.214 kb on - strandat 99.214 kb on - strandat 99.214 kb on - strandat 99.214 kb on - strandat 99.246 kb on - strandat 99.251 kb on - strandat 99.251 kb on - strandat 99.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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96,417 + GFF84 0.29 +0.4
96,418 - GFF84 0.29 -0.2
96,584 - GFF84 0.44 -2.2
96,584 - GFF84 0.44 -1.5
96,588 + GFF84 0.44 -0.2
96,588 + GFF84 0.44 -0.7
96,588 + GFF84 0.44 -0.8
96,588 + GFF84 0.44 +0.6
96,589 - GFF84 0.44 -1.0
96,589 - GFF84 0.44 -1.0
96,610 + GFF84 0.46 -0.6
96,632 + GFF84 0.48 -0.0
96,632 + GFF84 0.48 +0.0
96,632 + GFF84 0.48 -0.5
96,632 + GFF84 0.48 -1.0
96,632 + GFF84 0.48 -1.6
96,633 - GFF84 0.48 -1.0
96,633 - GFF84 0.48 -1.1
96,633 - GFF84 0.48 -0.6
96,633 - GFF84 0.48 +0.0
96,765 - GFF84 0.60 -0.4
96,765 - GFF84 0.60 -1.0
96,821 + GFF84 0.66 -0.3
96,909 + GFF84 0.74 -0.3
96,911 + GFF84 0.74 -0.3
96,911 + GFF84 0.74 +0.4
96,980 + GFF84 0.80 -1.0
96,980 + GFF84 0.80 +0.0
96,987 + GFF84 0.81 +0.3
97,018 + GFF84 0.84 -1.3
97,018 + GFF84 0.84 -1.3
97,019 - GFF84 0.84 -1.0
97,067 + GFF84 0.88 -0.5
97,108 + +0.7
97,234 + -0.8
97,234 + -0.3
97,260 + +0.0
97,260 + -0.7
97,261 - -0.6
97,269 - -2.1
97,273 + -1.5
97,274 - -1.6
97,336 + -0.8
97,336 + -0.2
97,336 + +0.6
97,386 + -1.3
97,386 + -0.4
97,445 + +0.0
97,446 - +1.8
97,455 - -1.3
97,525 + GFF85 0.13 -0.6
97,525 + GFF85 0.13 -0.3
97,545 + GFF85 0.15 +0.3
97,608 + GFF85 0.23 -0.3
97,608 + GFF85 0.23 -0.7
97,608 + GFF85 0.23 -0.2
97,608 + GFF85 0.23 -1.5
97,609 - GFF85 0.23 -0.6
97,614 + GFF85 0.24 +0.7
97,682 + GFF85 0.32 -0.6
97,833 + GFF85 0.49 +0.2
97,834 - GFF85 0.49 -1.0
97,839 + GFF85 0.50 -0.4
97,840 - GFF85 0.50 -1.0
97,863 + GFF85 0.53 -0.6
97,863 + GFF85 0.53 -0.7
97,863 + GFF85 0.53 -0.6
97,864 - GFF85 0.53 +0.1
97,864 - GFF85 0.53 -0.2
97,875 - GFF85 0.54 -2.2
97,908 + GFF85 0.58 -0.6
97,908 + GFF85 0.58 -0.6
97,909 - GFF85 0.58 -1.0
97,909 - GFF85 0.58 -0.3
98,005 + GFF85 0.70 -1.0
98,006 - GFF85 0.70 +0.0
98,088 + GFF85 0.79 -1.8
98,088 + GFF85 0.79 +0.6
98,088 + GFF85 0.79 +0.0
98,088 + GFF85 0.79 +0.0
98,088 + GFF85 0.79 -1.2
98,088 + GFF85 0.79 +0.0
98,088 + GFF85 0.79 +0.6
98,088 + GFF85 0.79 -0.6
98,088 + GFF85 0.79 +0.3
98,088 + GFF85 0.79 -2.0
98,088 + GFF85 0.79 +0.5
98,089 - GFF85 0.80 +0.6
98,089 - GFF85 0.80 -2.2
98,089 - GFF85 0.80 -0.2
98,089 - GFF85 0.80 -0.3
98,089 - GFF85 0.80 -0.4
98,089 - GFF85 0.80 -0.4
98,089 - GFF85 0.80 -1.0
98,089 - GFF85 0.80 -2.2
98,089 - GFF85 0.80 -1.0
98,089 - GFF85 0.80 +0.0
98,136 + GFF85 0.85 -0.8
98,136 + GFF85 0.85 -1.9
98,137 - GFF85 0.85 -0.6
98,213 + -1.3
98,213 + -1.0
98,213 + +0.3
98,304 - -0.4
98,432 + GFF86 0.27 -0.6
98,432 + GFF86 0.27 -0.5
98,432 + GFF86 0.27 +0.7
98,432 + GFF86 0.27 +0.6
98,432 + GFF86 0.27 +0.6
98,432 + GFF86 0.27 -0.3
98,432 + GFF86 0.27 -1.6
98,432 + GFF86 0.27 +0.3
98,433 - GFF86 0.27 -0.9
98,433 - GFF86 0.27 -0.5
98,433 - GFF86 0.27 +0.4
98,433 - GFF86 0.27 +0.5
98,486 + GFF86 0.38 +1.1
98,487 - GFF86 0.39 -0.6
98,499 - GFF86 0.41 -0.2
98,499 - GFF86 0.41 -1.6
98,499 - GFF86 0.41 -1.6
98,499 - GFF86 0.41 -0.7
98,520 + GFF86 0.45 -1.7
98,520 + GFF86 0.45 -1.3
98,521 - GFF86 0.46 +0.0
98,639 + GFF86 0.70 -0.2
98,639 + GFF86 0.70 -0.5
98,640 - GFF86 0.70 -0.3
98,640 - GFF86 0.70 +0.8
98,640 - GFF86 0.70 -1.6
98,643 + GFF86 0.71 -1.6
98,644 - GFF86 0.71 -2.3
98,654 - GFF86 0.73 -1.1
98,660 + GFF86 0.75 -0.3
98,660 + GFF86 0.75 -0.3
98,661 - GFF86 0.75 -0.7
98,661 - GFF86 0.75 +1.0
98,750 + -0.2
98,750 + -1.8
98,750 + -1.0
98,750 + -1.0
98,750 + -2.2
98,751 - +0.3
98,751 - -2.0
98,751 - -0.6
98,751 - -0.5
98,751 - -1.3
98,751 - +0.7
98,751 - -0.3
98,758 + -1.3
98,830 + +0.3
98,831 - -1.8
98,834 + -2.5
98,834 + -1.6
98,834 + -1.8
98,834 + -0.9
98,834 + -0.6
98,835 - -0.8
98,835 - -0.3
98,835 - -1.2
98,835 - -2.0
98,835 - -0.3
98,835 - +0.0
99,214 - -0.7
99,214 - +0.0
99,214 - +0.6
99,214 - -0.7
99,246 - -0.9
99,251 - -1.4
99,251 - -0.5
99,251 - +0.3

Or see this region's nucleotide sequence