Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2694 and GFF2695 are separated by 204 nucleotides GFF2695 and GFF2696 are separated by 29 nucleotides GFF2696 and GFF2697 are separated by 85 nucleotides GFF2697 and GFF2698 are separated by 169 nucleotides
GFF2694 - hypothetical protein, at 97,677 to 98,465
GFF2694
GFF2695 - Outer membrane lipoprotein pcp, at 98,670 to 99,128
GFF2695
GFF2696 - Adenosine kinase, at 99,158 to 100,126
GFF2696
GFF2697 - hypothetical protein, at 100,212 to 100,778
GFF2697
GFF2698 - hypothetical protein, at 100,948 to 101,436
GFF2698
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 98.192 kb on - strand, within GFF2694 at 98.192 kb on - strand, within GFF2694 at 98.216 kb on + strand, within GFF2694 at 98.217 kb on - strand, within GFF2694 at 98.262 kb on + strand, within GFF2694 at 98.262 kb on + strand, within GFF2694 at 98.431 kb on + strand at 98.434 kb on - strand at 98.460 kb on + strand at 98.489 kb on + strand at 98.490 kb on - strand at 98.490 kb on - strand at 98.490 kb on - strand at 98.497 kb on + strand at 98.497 kb on + strand at 98.497 kb on + strand at 98.498 kb on - strand at 98.498 kb on - strand at 98.500 kb on + strand at 98.500 kb on + strand at 98.501 kb on - strand at 98.501 kb on - strand at 98.501 kb on - strand at 98.501 kb on - strand at 98.556 kb on + strand at 98.556 kb on + strand at 98.556 kb on + strand at 98.557 kb on - strand at 98.583 kb on - strand at 98.583 kb on - strand at 98.585 kb on + strand at 98.599 kb on + strand at 98.599 kb on + strand at 98.672 kb on - strand at 98.712 kb on + strand at 98.942 kb on + strand, within GFF2695 at 98.943 kb on - strand, within GFF2695 at 98.947 kb on - strand, within GFF2695 at 98.947 kb on - strand, within GFF2695 at 98.947 kb on - strand, within GFF2695 at 98.995 kb on - strand, within GFF2695 at 99.041 kb on - strand, within GFF2695 at 99.048 kb on - strand, within GFF2695 at 99.057 kb on - strand, within GFF2695 at 99.115 kb on - strand at 99.115 kb on - strand at 99.115 kb on - strand at 99.160 kb on - strand at 99.182 kb on - strand at 99.207 kb on - strand at 99.222 kb on + strand at 99.223 kb on - strand at 99.223 kb on - strand at 99.299 kb on - strand, within GFF2696 at 99.349 kb on - strand, within GFF2696 at 99.367 kb on - strand, within GFF2696 at 99.392 kb on + strand, within GFF2696 at 99.393 kb on - strand, within GFF2696 at 99.400 kb on + strand, within GFF2696 at 99.400 kb on + strand, within GFF2696 at 99.401 kb on - strand, within GFF2696 at 99.401 kb on - strand, within GFF2696 at 99.401 kb on - strand, within GFF2696 at 99.401 kb on - strand, within GFF2696 at 99.401 kb on - strand, within GFF2696 at 99.444 kb on + strand, within GFF2696 at 99.444 kb on + strand, within GFF2696 at 99.444 kb on + strand, within GFF2696 at 99.445 kb on - strand, within GFF2696 at 99.445 kb on - strand, within GFF2696 at 99.445 kb on - strand, within GFF2696 at 99.449 kb on - strand, within GFF2696 at 99.550 kb on - strand, within GFF2696 at 99.567 kb on + strand, within GFF2696 at 99.568 kb on - strand, within GFF2696 at 99.568 kb on - strand, within GFF2696 at 99.568 kb on - strand, within GFF2696 at 99.568 kb on - strand, within GFF2696 at 99.584 kb on - strand, within GFF2696 at 99.607 kb on + strand, within GFF2696 at 99.607 kb on + strand, within GFF2696 at 99.724 kb on + strand, within GFF2696 at 99.724 kb on + strand, within GFF2696 at 99.725 kb on - strand, within GFF2696 at 99.752 kb on - strand, within GFF2696 at 99.752 kb on - strand, within GFF2696 at 99.752 kb on - strand, within GFF2696 at 99.759 kb on + strand, within GFF2696 at 99.759 kb on + strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.760 kb on - strand, within GFF2696 at 99.788 kb on - strand, within GFF2696 at 99.818 kb on - strand, within GFF2696 at 99.818 kb on - strand, within GFF2696 at 99.818 kb on - strand, within GFF2696 at 99.835 kb on - strand, within GFF2696 at 99.835 kb on - strand, within GFF2696 at 99.835 kb on - strand, within GFF2696 at 99.871 kb on + strand, within GFF2696 at 99.871 kb on + strand, within GFF2696 at 99.871 kb on + strand, within GFF2696 at 99.871 kb on + strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.872 kb on - strand, within GFF2696 at 99.897 kb on + strand, within GFF2696 at 99.963 kb on + strand, within GFF2696 at 99.963 kb on + strand, within GFF2696 at 99.963 kb on + strand, within GFF2696 at 99.963 kb on + strand, within GFF2696 at 99.964 kb on - strand, within GFF2696 at 99.964 kb on - strand, within GFF2696 at 99.964 kb on - strand, within GFF2696 at 99.964 kb on - strand, within GFF2696 at 99.971 kb on - strand, within GFF2696 at 99.971 kb on - strand, within GFF2696 at 99.971 kb on - strand, within GFF2696 at 99.971 kb on - strand, within GFF2696 at 100.033 kb on + strand at 100.115 kb on - strand at 100.153 kb on + strand at 100.153 kb on + strand at 100.154 kb on - strand at 100.159 kb on + strand at 100.159 kb on + strand at 100.159 kb on + strand at 100.160 kb on - strand at 100.160 kb on - strand at 100.160 kb on - strand at 100.162 kb on + strand at 100.162 kb on + strand at 100.162 kb on + strand at 100.162 kb on + strand at 100.162 kb on + strand at 100.162 kb on + strand at 100.193 kb on + strand at 100.194 kb on - strand at 100.194 kb on - strand at 100.194 kb on - strand at 100.306 kb on - strand, within GFF2697 at 100.362 kb on - strand, within GFF2697 at 100.472 kb on + strand, within GFF2697 at 100.473 kb on - strand, within GFF2697 at 100.518 kb on - strand, within GFF2697 at 100.518 kb on - strand, within GFF2697 at 100.651 kb on + strand, within GFF2697 at 100.657 kb on + strand, within GFF2697 at 100.657 kb on + strand, within GFF2697 at 100.658 kb on - strand, within GFF2697 at 100.702 kb on - strand, within GFF2697 at 100.715 kb on + strand, within GFF2697 at 100.716 kb on - strand, within GFF2697 at 100.747 kb on - strand at 100.783 kb on - strand at 100.788 kb on + strand at 100.801 kb on - strand at 100.810 kb on + strand at 100.915 kb on - strand at 100.921 kb on + strand at 100.921 kb on + strand at 100.921 kb on + strand at 100.921 kb on + strand at 100.921 kb on + strand at 100.922 kb on - strand at 100.922 kb on - strand at 100.930 kb on + strand at 100.930 kb on + strand at 100.930 kb on + strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.961 kb on + strand at 100.962 kb on - strand at 100.964 kb on + strand at 100.964 kb on + strand at 100.964 kb on + strand at 100.964 kb on + strand at 100.964 kb on + strand at 100.965 kb on - strand at 100.965 kb on - strand at 100.965 kb on - strand at 100.965 kb on - strand at 100.965 kb on - strand at 100.968 kb on + strand at 100.968 kb on + strand at 101.014 kb on + strand, within GFF2698 at 101.014 kb on + strand, within GFF2698 at 101.014 kb on + strand, within GFF2698 at 101.015 kb on - strand, within GFF2698 at 101.015 kb on - strand, within GFF2698 at 101.015 kb on - strand, within GFF2698 at 101.015 kb on - strand, within GFF2698 at 101.015 kb on - strand, within GFF2698 at 101.015 kb on - strand, within GFF2698 at 101.022 kb on + strand, within GFF2698 at 101.048 kb on + strand, within GFF2698
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 98,192 - GFF2694 0.65 -0.9 98,192 - GFF2694 0.65 -1.0 98,216 + GFF2694 0.68 -1.3 98,217 - GFF2694 0.68 -0.1 98,262 + GFF2694 0.74 -0.1 98,262 + GFF2694 0.74 -0.6 98,431 + +0.3 98,434 - -0.2 98,460 + +0.0 98,489 + -2.0 98,490 - -1.9 98,490 - -1.3 98,490 - -0.1 98,497 + -2.2 98,497 + -2.4 98,497 + -2.6 98,498 - +0.7 98,498 - -1.4 98,500 + -1.7 98,500 + -0.7 98,501 - +0.3 98,501 - -1.0 98,501 - -1.3 98,501 - -1.0 98,556 + -2.7 98,556 + -1.2 98,556 + -0.5 98,557 - -1.2 98,583 - -0.7 98,583 - -0.2 98,585 + +0.0 98,599 + +0.0 98,599 + -1.0 98,672 - +0.8 98,712 + -1.0 98,942 + GFF2695 0.59 -1.3 98,943 - GFF2695 0.59 +0.6 98,947 - GFF2695 0.60 -0.3 98,947 - GFF2695 0.60 -0.7 98,947 - GFF2695 0.60 -0.2 98,995 - GFF2695 0.71 -1.3 99,041 - GFF2695 0.81 +0.0 99,048 - GFF2695 0.82 -1.3 99,057 - GFF2695 0.84 +0.0 99,115 - -0.7 99,115 - -1.8 99,115 - +1.6 99,160 - -0.7 99,182 - -1.1 99,207 - -2.0 99,222 + -1.0 99,223 - -1.1 99,223 - -1.0 99,299 - GFF2696 0.15 -1.2 99,349 - GFF2696 0.20 -2.0 99,367 - GFF2696 0.22 -1.3 99,392 + GFF2696 0.24 -1.0 99,393 - GFF2696 0.24 -2.0 99,400 + GFF2696 0.25 -1.6 99,400 + GFF2696 0.25 -1.3 99,401 - GFF2696 0.25 -0.6 99,401 - GFF2696 0.25 -0.6 99,401 - GFF2696 0.25 -2.0 99,401 - GFF2696 0.25 -1.3 99,401 - GFF2696 0.25 -2.2 99,444 + GFF2696 0.30 -1.3 99,444 + GFF2696 0.30 -1.3 99,444 + GFF2696 0.30 -2.2 99,445 - GFF2696 0.30 -1.3 99,445 - GFF2696 0.30 +0.6 99,445 - GFF2696 0.30 -1.4 99,449 - GFF2696 0.30 -2.0 99,550 - GFF2696 0.40 -1.5 99,567 + GFF2696 0.42 -2.8 99,568 - GFF2696 0.42 -1.0 99,568 - GFF2696 0.42 -1.8 99,568 - GFF2696 0.42 -3.0 99,568 - GFF2696 0.42 -1.2 99,584 - GFF2696 0.44 -1.3 99,607 + GFF2696 0.46 -2.3 99,607 + GFF2696 0.46 -2.2 99,724 + GFF2696 0.58 -1.0 99,724 + GFF2696 0.58 -1.0 99,725 - GFF2696 0.59 -1.7 99,752 - GFF2696 0.61 -2.6 99,752 - GFF2696 0.61 -0.8 99,752 - GFF2696 0.61 -1.8 99,759 + GFF2696 0.62 -3.0 99,759 + GFF2696 0.62 -1.9 99,760 - GFF2696 0.62 -1.8 99,760 - GFF2696 0.62 -1.8 99,760 - GFF2696 0.62 -3.5 99,760 - GFF2696 0.62 -3.1 99,760 - GFF2696 0.62 -1.7 99,760 - GFF2696 0.62 -1.3 99,760 - GFF2696 0.62 -0.7 99,788 - GFF2696 0.65 -1.6 99,818 - GFF2696 0.68 -3.0 99,818 - GFF2696 0.68 -1.0 99,818 - GFF2696 0.68 -0.8 99,835 - GFF2696 0.70 -0.9 99,835 - GFF2696 0.70 -1.6 99,835 - GFF2696 0.70 -1.6 99,871 + GFF2696 0.74 -0.8 99,871 + GFF2696 0.74 -1.0 99,871 + GFF2696 0.74 -0.6 99,871 + GFF2696 0.74 -1.3 99,872 - GFF2696 0.74 -2.1 99,872 - GFF2696 0.74 -1.3 99,872 - GFF2696 0.74 -1.8 99,872 - GFF2696 0.74 -0.6 99,872 - GFF2696 0.74 -1.5 99,872 - GFF2696 0.74 -2.2 99,872 - GFF2696 0.74 -2.6 99,872 - GFF2696 0.74 -1.1 99,872 - GFF2696 0.74 -2.9 99,872 - GFF2696 0.74 -2.2 99,872 - GFF2696 0.74 -2.3 99,897 + GFF2696 0.76 -1.0 99,963 + GFF2696 0.83 -1.8 99,963 + GFF2696 0.83 -1.3 99,963 + GFF2696 0.83 +0.0 99,963 + GFF2696 0.83 -1.6 99,964 - GFF2696 0.83 -1.0 99,964 - GFF2696 0.83 -0.7 99,964 - GFF2696 0.83 -2.6 99,964 - GFF2696 0.83 -2.2 99,971 - GFF2696 0.84 -2.2 99,971 - GFF2696 0.84 -2.0 99,971 - GFF2696 0.84 -1.8 99,971 - GFF2696 0.84 -1.0 100,033 + -3.2 100,115 - -1.8 100,153 + -1.8 100,153 + -1.6 100,154 - -0.2 100,159 + -1.2 100,159 + -1.8 100,159 + -1.8 100,160 - -1.8 100,160 - -1.0 100,160 - -0.1 100,162 + -2.0 100,162 + -0.9 100,162 + +0.6 100,162 + -0.5 100,162 + +0.0 100,162 + -1.2 100,193 + -0.7 100,194 - -0.9 100,194 - -0.7 100,194 - -1.0 100,306 - GFF2697 0.17 +0.2 100,362 - GFF2697 0.26 +0.0 100,472 + GFF2697 0.46 +0.6 100,473 - GFF2697 0.46 -1.6 100,518 - GFF2697 0.54 -0.9 100,518 - GFF2697 0.54 -1.2 100,651 + GFF2697 0.77 -0.7 100,657 + GFF2697 0.78 -1.6 100,657 + GFF2697 0.78 -2.0 100,658 - GFF2697 0.79 -0.2 100,702 - GFF2697 0.86 -1.5 100,715 + GFF2697 0.89 +0.2 100,716 - GFF2697 0.89 -1.9 100,747 - -1.8 100,783 - -1.6 100,788 + -1.6 100,801 - -1.3 100,810 + -1.3 100,915 - +0.3 100,921 + -1.5 100,921 + -1.0 100,921 + +0.3 100,921 + +0.7 100,921 + +0.6 100,922 - -1.0 100,922 - -0.6 100,930 + -0.4 100,930 + +0.0 100,930 + +0.3 100,931 - -0.8 100,931 - -1.6 100,931 - -0.8 100,931 - +0.0 100,961 + -0.7 100,962 - +0.7 100,964 + -1.6 100,964 + -0.3 100,964 + -1.7 100,964 + -0.3 100,964 + -0.7 100,965 - -1.9 100,965 - -1.0 100,965 - -1.0 100,965 - -2.9 100,965 - -1.5 100,968 + -2.6 100,968 + -0.7 101,014 + GFF2698 0.13 +0.7 101,014 + GFF2698 0.13 +0.0 101,014 + GFF2698 0.13 -0.4 101,015 - GFF2698 0.14 -0.4 101,015 - GFF2698 0.14 -1.0 101,015 - GFF2698 0.14 -1.8 101,015 - GFF2698 0.14 -1.0 101,015 - GFF2698 0.14 -1.4 101,015 - GFF2698 0.14 -1.7 101,022 + GFF2698 0.15 +1.0 101,048 + GFF2698 0.20 +0.6
Or see this region's nucleotide sequence