Strain Fitness in Methylophilus sp. DMC18 around GFF215

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF214 and GFF215 are separated by 62 nucleotidesGFF215 and GFF216 overlap by 26 nucleotides GFF214 - Nitrate regulatory protein, at 219,905 to 221,182 GFF214 GFF215 - Aliphatic amidase regulator, at 221,245 to 221,934 GFF215 GFF216 - Aliphatic amidase expression-regulating protein, at 221,909 to 223,075 GFF216 Position (kb) 221 222Strain fitness (log2 ratio) -2 -1 0 1at 220.284 kb on + strand, within GFF214at 220.418 kb on - strand, within GFF214at 220.432 kb on + strand, within GFF214at 220.496 kb on + strand, within GFF214at 220.497 kb on - strand, within GFF214at 220.533 kb on - strand, within GFF214at 220.640 kb on + strand, within GFF214at 220.641 kb on - strand, within GFF214at 220.641 kb on - strand, within GFF214at 220.699 kb on - strand, within GFF214at 220.699 kb on - strand, within GFF214at 220.778 kb on + strand, within GFF214at 220.778 kb on + strand, within GFF214at 220.778 kb on + strand, within GFF214at 220.779 kb on - strand, within GFF214at 220.791 kb on + strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.799 kb on + strand, within GFF214at 220.799 kb on + strand, within GFF214at 220.800 kb on - strand, within GFF214at 220.831 kb on + strand, within GFF214at 220.831 kb on + strand, within GFF214at 220.832 kb on - strand, within GFF214at 220.844 kb on + strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.853 kb on - strand, within GFF214at 220.929 kb on + strand, within GFF214at 221.025 kb on - strand, within GFF214at 221.029 kb on - strand, within GFF214at 221.096 kb on - strandat 221.149 kb on + strandat 221.272 kb on + strandat 221.273 kb on - strandat 221.273 kb on - strandat 221.273 kb on - strandat 221.273 kb on - strandat 221.355 kb on - strand, within GFF215at 221.451 kb on + strand, within GFF215at 221.470 kb on + strand, within GFF215at 221.471 kb on - strand, within GFF215at 221.471 kb on - strand, within GFF215at 221.471 kb on - strand, within GFF215at 221.595 kb on - strand, within GFF215at 221.674 kb on + strand, within GFF215at 221.674 kb on + strand, within GFF215at 221.675 kb on - strand, within GFF215at 221.976 kb on + strandat 222.062 kb on + strand, within GFF216at 222.097 kb on + strand, within GFF216at 222.098 kb on - strand, within GFF216at 222.153 kb on + strand, within GFF216at 222.153 kb on + strand, within GFF216at 222.207 kb on + strand, within GFF216at 222.208 kb on - strand, within GFF216at 222.208 kb on - strand, within GFF216at 222.226 kb on + strand, within GFF216at 222.226 kb on + strand, within GFF216at 222.226 kb on + strand, within GFF216at 222.227 kb on - strand, within GFF216at 222.227 kb on - strand, within GFF216at 222.227 kb on - strand, within GFF216at 222.229 kb on + strand, within GFF216at 222.230 kb on - strand, within GFF216at 222.230 kb on - strand, within GFF216at 222.230 kb on - strand, within GFF216at 222.230 kb on - strand, within GFF216at 222.249 kb on + strand, within GFF216at 222.427 kb on - strand, within GFF216at 222.435 kb on + strand, within GFF216at 222.436 kb on - strand, within GFF216at 222.436 kb on - strand, within GFF216at 222.466 kb on + strand, within GFF216at 222.545 kb on + strand, within GFF216at 222.546 kb on - strand, within GFF216at 222.546 kb on - strand, within GFF216at 222.549 kb on + strand, within GFF216at 222.550 kb on - strand, within GFF216at 222.550 kb on - strand, within GFF216at 222.624 kb on + strand, within GFF216at 222.631 kb on - strand, within GFF216at 222.678 kb on + strand, within GFF216at 222.678 kb on + strand, within GFF216at 222.679 kb on - strand, within GFF216at 222.679 kb on - strand, within GFF216at 222.723 kb on + strand, within GFF216at 222.723 kb on + strand, within GFF216at 222.756 kb on + strand, within GFF216at 222.756 kb on + strand, within GFF216at 222.757 kb on - strand, within GFF216at 222.829 kb on + strand, within GFF216at 222.829 kb on + strand, within GFF216at 222.829 kb on + strand, within GFF216at 222.830 kb on - strand, within GFF216at 222.830 kb on - strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.831 kb on + strand, within GFF216at 222.832 kb on - strand, within GFF216at 222.832 kb on - strand, within GFF216at 222.832 kb on - strand, within GFF216at 222.832 kb on - strand, within GFF216at 222.832 kb on - strand, within GFF216at 222.884 kb on + strand, within GFF216at 222.891 kb on + strand, within GFF216at 222.892 kb on - strand, within GFF216at 222.918 kb on + strand, within GFF216at 222.918 kb on + strand, within GFF216at 222.919 kb on - strand, within GFF216at 222.919 kb on - strand, within GFF216

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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220,284 + GFF214 0.30 -0.5
220,418 - GFF214 0.40 -1.6
220,432 + GFF214 0.41 -1.1
220,496 + GFF214 0.46 +0.2
220,497 - GFF214 0.46 -0.0
220,533 - GFF214 0.49 -0.4
220,640 + GFF214 0.58 -1.3
220,641 - GFF214 0.58 -0.6
220,641 - GFF214 0.58 -0.0
220,699 - GFF214 0.62 -1.5
220,699 - GFF214 0.62 -1.3
220,778 + GFF214 0.68 +1.0
220,778 + GFF214 0.68 -1.0
220,778 + GFF214 0.68 -0.3
220,779 - GFF214 0.68 -1.1
220,791 + GFF214 0.69 -1.0
220,792 - GFF214 0.69 -1.8
220,792 - GFF214 0.69 -1.0
220,792 - GFF214 0.69 -0.3
220,792 - GFF214 0.69 -0.0
220,792 - GFF214 0.69 -0.9
220,799 + GFF214 0.70 +1.2
220,799 + GFF214 0.70 +1.0
220,800 - GFF214 0.70 -0.2
220,831 + GFF214 0.72 -0.7
220,831 + GFF214 0.72 -1.0
220,832 - GFF214 0.73 -0.3
220,844 + GFF214 0.73 -1.3
220,845 - GFF214 0.74 +0.7
220,845 - GFF214 0.74 +0.7
220,845 - GFF214 0.74 -0.3
220,845 - GFF214 0.74 +0.7
220,853 - GFF214 0.74 +0.9
220,929 + GFF214 0.80 -0.4
221,025 - GFF214 0.88 -1.3
221,029 - GFF214 0.88 -0.1
221,096 - -1.6
221,149 + -1.6
221,272 + -0.3
221,273 - -0.0
221,273 - -0.8
221,273 - -0.1
221,273 - -0.6
221,355 - GFF215 0.16 -0.7
221,451 + GFF215 0.30 -0.0
221,470 + GFF215 0.33 -0.2
221,471 - GFF215 0.33 -0.6
221,471 - GFF215 0.33 -1.3
221,471 - GFF215 0.33 -0.7
221,595 - GFF215 0.51 +0.7
221,674 + GFF215 0.62 +1.0
221,674 + GFF215 0.62 +0.6
221,675 - GFF215 0.62 -0.6
221,976 + -1.1
222,062 + GFF216 0.13 -1.0
222,097 + GFF216 0.16 -0.0
222,098 - GFF216 0.16 -0.3
222,153 + GFF216 0.21 +0.8
222,153 + GFF216 0.21 -2.0
222,207 + GFF216 0.26 +0.6
222,208 - GFF216 0.26 -0.6
222,208 - GFF216 0.26 +0.4
222,226 + GFF216 0.27 -0.7
222,226 + GFF216 0.27 -1.3
222,226 + GFF216 0.27 -1.3
222,227 - GFF216 0.27 -0.8
222,227 - GFF216 0.27 +0.7
222,227 - GFF216 0.27 +0.2
222,229 + GFF216 0.27 -0.4
222,230 - GFF216 0.28 -0.6
222,230 - GFF216 0.28 +0.3
222,230 - GFF216 0.28 -0.6
222,230 - GFF216 0.28 -1.2
222,249 + GFF216 0.29 -1.2
222,427 - GFF216 0.44 +0.8
222,435 + GFF216 0.45 +0.1
222,436 - GFF216 0.45 -0.9
222,436 - GFF216 0.45 -0.3
222,466 + GFF216 0.48 -0.9
222,545 + GFF216 0.54 +0.4
222,546 - GFF216 0.55 +1.0
222,546 - GFF216 0.55 -0.8
222,549 + GFF216 0.55 +0.1
222,550 - GFF216 0.55 -1.6
222,550 - GFF216 0.55 -1.0
222,624 + GFF216 0.61 -1.0
222,631 - GFF216 0.62 -0.2
222,678 + GFF216 0.66 -0.5
222,678 + GFF216 0.66 -1.6
222,679 - GFF216 0.66 -0.1
222,679 - GFF216 0.66 -0.3
222,723 + GFF216 0.70 -1.8
222,723 + GFF216 0.70 +1.0
222,756 + GFF216 0.73 -0.2
222,756 + GFF216 0.73 -1.1
222,757 - GFF216 0.73 -1.5
222,829 + GFF216 0.79 -1.0
222,829 + GFF216 0.79 -1.2
222,829 + GFF216 0.79 +0.1
222,830 - GFF216 0.79 +0.1
222,830 - GFF216 0.79 +1.3
222,831 + GFF216 0.79 -0.8
222,831 + GFF216 0.79 -0.0
222,831 + GFF216 0.79 -1.8
222,831 + GFF216 0.79 -0.7
222,831 + GFF216 0.79 -0.9
222,831 + GFF216 0.79 -1.8
222,831 + GFF216 0.79 -0.3
222,831 + GFF216 0.79 -1.7
222,832 - GFF216 0.79 +0.3
222,832 - GFF216 0.79 -1.0
222,832 - GFF216 0.79 +0.1
222,832 - GFF216 0.79 -1.2
222,832 - GFF216 0.79 +1.2
222,884 + GFF216 0.84 -0.4
222,891 + GFF216 0.84 +0.3
222,892 - GFF216 0.84 -0.5
222,918 + GFF216 0.86 -0.9
222,918 + GFF216 0.86 -0.2
222,919 - GFF216 0.87 -0.9
222,919 - GFF216 0.87 -0.0

Or see this region's nucleotide sequence